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Updated: Feb 10, 2026

Using SCOPE to Identify Potential Regulatory Motifs in Coregulated Genes
Published on: May 31, 2011
Gene regulatory and signaling networks exhibit distinct topological distributions of motifs
Gustavo Rodrigues Ferreira1, Helder Imoto Nakaya2, Luciano da Fontoura Costa1
1São Carlos Institute of Physics, University of São Paulo, São Carlos, Brazil.
Abstract:
The biological processes of cellular decision making and differentiation involve a plethora of signaling pathways and gene regulatory circuits. These networks in turn exhibit a multitude of motifs playing crucial parts in regulating network activity. Here we compare the topological placement of motifs in gene regulatory and signaling networks and observe that it suggests different evolutionary strategies in motif distribution for distinct cellular subnetworks.
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