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Updated: Feb 10, 2026

In Vitro Analysis of E3 Ubiquitin Ligase Function
Published on: May 14, 2021
C-Terminal End-Directed Protein Elimination by CRL2 Ubiquitin Ligases
Hsiu-Chuan Lin1, Chi-Wei Yeh2, Yen-Fu Chen2
1Institute of Molecular Biology, Academia Sinica, Taipei 11529, Taiwan; Genome and Systems Biology Degree Program, National Taiwan University and Academia Sinica, Taipei 10617, Taiwan.
Abstract:
The proteolysis-assisted protein quality control system guards the proteome from potentially detrimental aberrant proteins. How miscellaneous defective proteins are specifically eliminated and which molecular characteristics direct them for removal are fundamental questions. We reveal a mechanism, DesCEND (destruction via C-end degrons), by which CRL2 ubiquitin ligase uses interchangeable substrate receptors to recognize the unusual C termini of abnormal proteins (i.e., C-end degrons). C-end degrons are mostly less than ten residues in length and comprise a few indispensable residues along with some rather degenerate ones. The C-terminal end position is essential for C-end degron function. Truncated selenoproteins generated by translation errors and the USP1 N-terminal fragment from post-translational cleavage are eliminated by DesCEND. DesCEND also targets full-length proteins with naturally occurring C-end degrons. The C-end degron in DesCEND echoes the N-end degron in the N-end rule pathway, highlighting the dominance of protein "ends" as indicators for protein elimination.
Insights
The DesCEND pathway uses C-end degrons to eliminate aberrant proteins via the CRL2 ubiquitin ligase. This mechanism targets proteins with unusual C termini, similar to the N-end rule pathway.
Area of Science:
- Molecular Biology
- Cellular Biology
- Biochemistry
Background:
- Protein quality control is vital for cellular health, preventing the accumulation of harmful aberrant proteins.
- Understanding the mechanisms of selective protein degradation is crucial for comprehending cellular homeostasis.
Purpose of the Study:
- To elucidate the mechanism by which the CRL2 ubiquitin ligase system recognizes and eliminates defective proteins.
- To identify the molecular determinants that target proteins for degradation via their C termini.
Main Methods:
- Identification and characterization of the DesCEND pathway.
- Analysis of C-end degron structure and function.
- Investigating the role of CRL2 ubiquitin ligase and its substrate receptors.
Main Results:
- A novel degradation pathway, DesCEND (destruction via C-end degrons), was revealed.
- DesCEND utilizes interchangeable substrate receptors within the CRL2 ubiquitin ligase complex to recognize unusual C termini (C-end degrons).
- C-end degrons are short sequences, typically under ten residues, with essential and degenerate components, critically dependent on their C-terminal position.
Conclusions:
- DesCEND mediates the elimination of truncated selenoproteins and USP1 fragments, as well as full-length proteins with natural C-end degrons.
- The C-end degron mechanism parallels the N-end rule pathway, emphasizing the significance of protein "ends" in degradation signaling.
- This discovery provides fundamental insights into proteolysis-assisted protein quality control.
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