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Isolation and Profiling of MicroRNA-containing Exosomes from Human Bile
Published on: June 13, 2016
Feasibility of microRNA profiling in human inner ear perilymph
Matthew Shew1, Athanasia Warnecke2, Thomas Lenarz2
1Departments of Otolaryngology Head and Neck Surgery.
Abstract:
Hearing loss is common and caused by a wide range of molecular and cellular pathologies. Current diagnosis of hearing loss depends on a combination of physiologic testing, patient history, and in some cases genetic testing. Currently, no biopsy or equivalent procedure exists to diagnose inner ear disorders. MicroRNAs (miRNA) are short ribonucleic acids that regulate a variety of cellular processes. They have been found to be reliable markers for a variety of disease processes. In particular, a variety of miRNAs that are markers for neurodegenerative disease have been identified in cerebrospinal fluid. The aim of this study was to determine whether miRNAs could be identified in human perilymph potentially leading to the development of biomarkers for inner ear disease. Prospective sampling of human perilymph and its analysis were carried out. Patients undergoing surgery in which the inner ear is opened as part of the procedure (cochlear implantation, stapedectomy, labyrinthectomy) were recruited. A total of 2-5 μl of perilymph was collected and analyzed using Affymetrix GeneChip miRNA 4.0 microarrays. MiRNA common to all sampling approaches were selected. Analysis of miRNAs was carried out by evaluating miRNA targets in a cochlear transcriptome library using the Ingenuity Pathway Analysis software package. MiRNAs could be isolated from the perilymph of all patients. Evaluation of miRNAs shows the presence of miRNA populations that are predicted to interact with genes expressed in the inner ear. Additional analysis of miRNA populations shows that perilymph miRNAs could be linked to pathways associated with hearing disorders. Sampling of human perilymph is feasible and can potentially identify miRNAs associated with hearing disorders.
Insights
MicroRNAs (miRNAs) were successfully isolated from human perilymph, offering a potential new method for diagnosing inner ear disorders. These findings suggest miRNAs in perilymph could serve as biomarkers for hearing loss conditions.
Area of Science:
- Otolaryngology
- Molecular Biology
- Genetics
Background:
- Hearing loss stems from diverse molecular and cellular issues.
- Current diagnosis relies on physiologic tests, patient history, and genetic testing, lacking direct inner ear tissue analysis.
- MicroRNAs (miRNAs) are crucial regulators of cellular processes and emerging disease biomarkers.
Purpose of the Study:
- To investigate the presence and potential of microRNAs (miRNAs) in human perilymph as biomarkers for inner ear diseases.
- To establish the feasibility of collecting perilymph for miRNA analysis.
Main Methods:
- Prospective collection of human perilymph samples from patients undergoing inner ear surgery.
- Analysis of isolated miRNAs using Affymetrix GeneChip miRNA 4.0 microarrays.
- Bioinformatic analysis of miRNA targets and associated pathways using Ingenuity Pathway Analysis.
Main Results:
- MicroRNAs (miRNAs) were successfully isolated from all collected human perilymph samples.
- Identified miRNAs are predicted to interact with genes expressed in the inner ear.
- Perilymph miRNAs correlate with pathways implicated in hearing disorders.
Conclusions:
- Human perilymph sampling is a feasible method for miRNA isolation.
- Perilymph miRNAs show promise as potential biomarkers for diagnosing inner ear disorders and hearing loss.
- This approach could lead to novel diagnostic tools for inner ear conditions.
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