Related Experiment Video
Updated: Feb 10, 2026

Using an Automated Cell Counter to Simplify Gene Expression Studies: siRNA Knockdown of IL-4 Dependent Gene Expression in Namalwa Cells
Published on: April 14, 2010
Changes in differential gene expression during a fatal stroke.
Shelley F Stone1, Christopher Armstrong2, Pauline E van Eeden1
1Centre for Clinical Research in Emergency Medicine, Harry Perkins Institute of Medical Research, Level 6 MRF Building, 50 Murray Street, Perth, WA 6000, Australia; Discipline of Emergency Medicine, School of Primary, Aboriginal and Rural Health Care, University of Western Australia, Perth, WA, Australia.
This study tracked gene expression in an early stroke patient, revealing key inflammatory markers like granzyme B and S100A12 that change rapidly after stroke onset.
Area of Science:
- Neuroscience
- Immunology
- Genetics
Background:
- Previous studies on gene expression in stroke often involve delayed blood sample collection, potentially missing early inflammatory responses.
- Understanding early genetic changes in ischemic stroke is crucial for distinguishing it from stroke mimics.
Purpose of the Study:
- To analyze differential gene expression over time in a young patient experiencing a fatal ischemic stroke, starting from symptom onset.
- To compare the patient's gene expression profile with that of an identical twin and healthy controls to identify early stroke-related genetic changes.
Main Methods:
- Blood samples were collected from the patient at multiple time points: Emergency Department arrival (T0), and 1, 3, and 24 hours post-arrival (T1, T3, T24).
- Gene expression analysis was performed using microarrays and compared to samples from an identical twin and two age/sex-matched healthy controls.
- Differential gene expression was assessed with a fold change cutoff of ±1.5.
Main Results:
- At T0, 12 messenger RNA (mRNA) were significantly upregulated in the patient compared to controls, with no downregulated mRNA.
- Granzyme B showed the highest upregulation at T0, decreasing over time. S100 calcium-binding protein A12 (S100A12) expression increased from T0 to T24.
- Genes like matrix metalloproteinase 9 and interleukin-18 receptor I were upregulated between T1-T3 and decreased by T24.
Conclusions:
- Early detection of specific gene expression patterns, such as granzyme B and S100A12, may aid in the rapid diagnosis of ischemic stroke.
- Temporal analysis of gene expression provides insights into the dynamic immunopathological processes during ischemic stroke evolution.
- Identifying early genetic biomarkers could improve the differentiation between true stroke events and stroke mimics.
Related Concept Videos
What is Gene Expression?
Gene expression is the process in which DNA directs the synthesis of functional products, that is, proteins. Cells can regulate gene expression at various stages. It allows organisms to generate different cell types and enables cells to adapt to internal and external factors.
Genetic Information Flows from DNA to RNA to Protein
A gene is a stretch of DNA that serves as the blueprint for functional RNAs and proteins. Since DNA is made up of nucleotides and proteins consist of amino...
What is Gene Expression?
Cell Specific Gene Expression
Cell Specific Gene Expression
Chromatin Position Affects Gene Expression
Topologically Associated Domains (TADs)
The 3-dimensional positioning of chromatin in the nucleus influences the...
mRNA Stability and Gene Expression
Cis-acting Elements involved in mRNA stability

