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Updated: Feb 10, 2026

Generation of High-Throughput Three-Dimensional Tumor Spheroids for Drug Screening
Published on: September 5, 2018
High throughput scaffold-based 3D micro-tumor array for efficient drug screening and chemosensitivity testing
Xiaojun Yan1, Lyu Zhou2, Zhaozhao Wu1
1Department of Biomedical Engineering, School of Medicine, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Tsinghua University, Beijing, 100084, PR China.
Abstract:
Oncology drug development is greatly hampered by inefficient drug screening using 2D culture. Herein, we present ready-to-use micro-scaffolds in 384-well format to generate uniform 3D micro-tumor array (3D-MTA, CV < 0.15) that predicts in vivo drug responses more accurately than 2D monolayer. 3D-MTA generated from both cell lines and primary cells achieved high screen quality (Z' > 0.5), and were compatible with standard high throughput and high content instruments. Doxorubicin identified by 3D-MTA and 2D successfully inhibited tumor growth in mice bearing lung cancer cell line (H226) xenografts, but not gemcitabine and vinorelbine, which were selected solely by 2D. Resistance towards targeted therapy was modeled on 3D-MTA, which elicited SK-BR-3 to express higher proliferation-related genes in response to gefitinb, as compared to 2D. Screening of 56 MAPK inhibitors identified pisamertib to synergistically improve cytotoxicity effect in combination with gefitinib. Primary tumor cells derived from patient-derived xenografts further attested concordance of drug response in 3D-MTA with in vivo response. 3D-MTA was further extended to realize chemosensitivity testing using patient-derived cells. Overall, 3D-MTA demonstrated strong potential to accelerate drug discovery and improve cancer treatment by providing efficient drug screening.
Insights
This study introduces a 3D micro-tumor array (3D-MTA) for more accurate oncology drug screening. This 3D model improves prediction of in vivo drug responses compared to traditional 2D cultures, accelerating cancer drug discovery.
Area of Science:
- Biomedical Engineering
- Oncology
- Drug Discovery
Background:
- Traditional 2D cell cultures limit the efficiency and accuracy of oncology drug screening.
- There is a need for improved 3D models that better mimic in vivo tumor environments.
Purpose of the Study:
- To develop and validate a 3D micro-tumor array (3D-MTA) for high-throughput oncology drug screening.
- To compare the predictive accuracy of 3D-MTA with 2D cultures for in vivo drug responses.
- To demonstrate the utility of 3D-MTA in modeling drug resistance and identifying synergistic drug combinations.
Main Methods:
- Generation of uniform 3D micro-tumor arrays (3D-MTA) in a 384-well format using micro-scaffolds.
- Screening of chemotherapeutic agents (doxorubicin, gemcitabine, vinorelbine) and targeted therapy (gefitinib) using 3D-MTA and 2D cultures.
- Modeling drug resistance and synergistic effects using patient-derived cells and xenografts.
- Compatibility assessment with standard high-throughput and high-content screening instruments.
Main Results:
- 3D-MTA achieved uniform tumor formation (CV < 0.15) and high screen quality (Z' > 0.5).
- 3D-MTA accurately predicted in vivo drug responses, identifying doxorubicin's efficacy while 2D cultures failed to distinguish ineffective drugs (gemcitabine, vinorelbine).
- 3D-MTA successfully modeled gefitinib resistance and identified pisamertinib as a synergistic agent with gefitinib.
- Drug response concordance was confirmed between 3D-MTA and in vivo studies using patient-derived cells and xenografts.
Conclusions:
- 3D micro-tumor arrays offer a robust and accurate platform for high-throughput oncology drug screening.
- This 3D model significantly improves the prediction of in vivo drug efficacy and resistance compared to 2D cultures.
- 3D-MTA holds strong potential to accelerate cancer drug discovery and enhance therapeutic strategies.
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