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Updated: Feb 9, 2026

Genotyping of Staphylococcus aureus by Ribosomal Spacer PCR RS-PCR
Published on: November 4, 2016
Some coagulase negative Staphylococcus spp. isolated from buffalo can be misidentified as Staphylococcus aureus by
Camila C de Almeida1,2, Lucas J L Pizauro3,2, Glenn A Soltes2
1Agriculture and Livestock Microbiology Graduation Program, Department of Veterinary Pathology, São Paulo State University (Unesp), School of Agricultural and Veterinarian Sciences, Jaboticabal, Brazil.
Objective:
Staphylococcus aureus is a commonly reported cause of buffalo mastitis. However, its prevalence may be overestimated. The aim of this study was to compare S. aureus identification by conventional phenotypic and genotypic assays versus Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry (MALDI-TOF MS) and novel real-time quantitative PCR tests for the cytochrome oxidase subunit D II (cydB) and staphylocoagulase (coa) genes.
Results:
From 408 samples obtained from buffalo milk/milking environment, 32 putative S. aureus strains were identified based on characteristic growth on Baird Parker agar, positive catalase reaction, ability to clot rabbit plasma, and positive Sa442 PCR assay. However, in further testing, only 10 of these strains were positive in latex agglutination tests and by MALDI-TOF MS, only eight of the 32 strains were S. aureus while the rest were S. chromogenes (19), S. agnetis (3), S. cohnii (1), or S. xylosus (1). All eight strains identified as S. aureus by MALDI-TOF analysis and confirmed by 16S RNA gene sequencing were positive in a S. aureus-specific cydB PCR test. As well, 7/8 S. aureus strains were PCR positive in a real-time coa PCR test as were 2/69 S. chromogenes and the lone S. xylosus strain tested.
Insights
Conventional methods may overestimate Staphylococcus aureus in buffalo mastitis. Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry (MALDI-TOF MS) and PCR gene targets offer more accurate identification of S. aureus.
Area of Science:
- Veterinary Microbiology
- Bovine Mastitis Research
- Diagnostic Microbiology
Background:
- Staphylococcus aureus is a primary cause of buffalo mastitis.
- Its prevalence might be overestimated by traditional identification methods.
Purpose of the Study:
- To compare conventional phenotypic and genotypic assays with MALDI-TOF MS and real-time PCR for S. aureus identification.
- To evaluate novel PCR targets (cydB and coa genes) for S. aureus detection.
Main Methods:
- Milk and environmental samples were analyzed using conventional methods (Baird Parker agar, catalase, plasma clotting, Sa442 PCR).
- Samples were further tested with latex agglutination, MALDI-TOF MS, 16S rRNA gene sequencing, and real-time PCR for cydB and coa genes.
Main Results:
- Out of 32 putative S. aureus strains, only 8 were confirmed by MALDI-TOF MS and 16S rRNA sequencing.
- MALDI-TOF MS identified other Staphylococcus species, including S. chromogenes and S. agnetis.
- S. aureus-specific cydB PCR confirmed all 8 S. aureus strains; coa PCR detected 7/8 S. aureus and some other species.
Conclusions:
- MALDI-TOF MS and molecular methods provide more accurate identification of S. aureus in buffalo mastitis cases.
- Conventional methods may lead to overestimation of S. aureus prevalence.
- Novel PCR targets show potential for specific S. aureus detection.
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