Related Experiment Video
Updated: Feb 9, 2026

Mapping Absolute DNA Density in Cell Nuclei using Single-molecule Localization Microscopy
Published on: November 11, 2025
Local Derivative-Free Approximation of Computationally Expensive Posterior Densities
Nikolay Bliznyuk1, David Ruppert2, Christine A Shoemaker3
1Assistant Professor, Department of Statistics, University of Florida, Gainesville, FL 32611.
Abstract:
Bayesian inference using Markov chain Monte Carlo (MCMC) is computationally prohibitive when the posterior density of interest, π, is computationally expensive to evaluate. We develop a derivative-free algorithm GRIMA to accurately approximate π by interpolation over its high-probability density (HPD) region, which is initially unknown. Our local approach reduces the waste of computational budget on approximation of π in the low-probability region, which is inherent in global experimental designs. However, estimation of the HPD region is nontrivial when derivatives of π are not available or are not informative about the shape of the HPD region. Without relying on derivatives, GRIMA iterates (a) sequential knot selection over the estimated HPD region of π to refine the surrogate posterior and (b) re-estimation of the HPD region using an MCMC sample from the updated surrogate density, which is inexpensive to obtain. GRIMA is applicable to approximation of general unnormalized posterior densities. To determine the range of tractable problem dimensions, we conduct simulation experiments on test densities with linear and nonlinear component-wise dependence, skewness, kurtosis and multimodality. Subsequently, we use GRIMA in a case study to calibrate a computationally intensive nonlinear regression model to real data from the Town Brook watershed. Supplemental materials for this article are available online.
More Related Videos
12:24Computed Tomography-guided Time-domain Diffuse Fluorescence Tomography in Small Animals for Localization of Cancer Biomarkers
Published on: July 17, 2012
09:57How to Measure Cortical Folding from MR Images: a Step-by-Step Tutorial to Compute Local Gyrification Index
Published on: January 2, 2012
Related Concept Videos
Approximate Integration
Linearization and Approximation
Application of Linearization and Approximation
Accuracy, limits, and approximation
Accuracy is defined as the closeness of the measured value to the true or actual value. In engineering mechanics, repeated measurements are taken during theoretical or experimental analyses to ensure that the result is precise and accurate.
The accuracy of any solution is based on the...
Linear Approximation in Frequency Domain
In contrast, nonlinear systems do not inherently possess these properties. However, for small deviations around an operating point, a nonlinear system can often be approximated as linear....
Linear Approximation in Time Domain
For a simple pendulum with a mass evenly distributed along its length and the center of mass located at half the pendulum's length,...