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The effect of machine learning regression algorithms and sample size on individualized behavioral prediction with
1State Key Laboratory of Cognitive Neuroscience and Learning & IDG/McGovern Institute for Brain Research, Beijing Normal University, Beijing, 100875, China; Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Machine learning (ML) regression algorithms and sample size significantly impact individualized behavior prediction. Larger sample sizes consistently improve prediction accuracy and stability across most ML methods, offering crucial guidance for research.
Area of Science:
- Neuroscience
- Machine Learning
- Cognitive Science
Background:
- Individualized prediction of behavior and cognition using machine learning (ML) regression is a growing field.
- The choice of ML regression algorithm and sample size critically affects prediction accuracy.
- Previous studies have not comprehensively evaluated these factors' impact on prediction performance.
Purpose of the Study:
- To assess the influence of six ML regression algorithms and varying sample sizes on individualized behavioral/cognitive prediction.
- To identify optimal ML algorithms and sample sizes for robust prediction using neuroimaging data.
Main Methods:
- Six ML regression algorithms (OLS, LASSO, Ridge, Elastic-Net, LSVR, RVR) were evaluated.
- Resting-state functional MRI (rs-fMRI) data from the Human Connectome Project (HCP) were used, with whole-brain resting-state functional connectivity (rsFC) and rsFC strength (rsFCS) as features.
- Twenty-five sample sizes, ranging from 20 to 700, were created through sub-sampling.
Main Results:
- LASSO regression with rsFC features and OLS regression with rsFCS features performed significantly worse than other algorithms.
- Prediction accuracy and stability increased exponentially with sample size, irrespective of the algorithm or feature type.
- Findings were robust across different datasets, preprocessing schemes, and cognitive scores.
Conclusions:
- The selection of ML regression algorithm and sample size critically influences individualized prediction performance.
- Increasing sample size consistently enhances prediction accuracy and stability.
- These results provide essential guidance for selecting appropriate ML methods and sample sizes in neuroimaging research.
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