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Updated: Feb 9, 2026

Protocols for Analyzing the Role of Paneth Cells in Regenerating the Murine Intestine using Conditional Cre-lox Mouse Models
Published on: November 21, 2015
The enteric microbiota regulates jejunal Paneth cell number and function without impacting intestinal stem cells
Alexi A Schoenborn1,2, Richard J von Furstenberg1,3, Smrithi Valsaraj1,2
1a Center for Gastrointestinal Biology and Disease , University of North Carolina at Chapel Hill , Chapel Hill , NC 27599 , USA.
The gut microbiota increases Paneth cell numbers and Reg3γ expression in the small intestine. However, the microbiota does not affect intestinal stem cell numbers or proliferation.
Area of Science:
- Gastroenterology and Microbiology
- Intestinal epithelial cell biology
- Host-microbe interactions
Background:
- Paneth cells (PCs) in the small intestine secrete antimicrobial peptides (AMPs) that modulate gut microbiota.
- The reciprocal influence of the enteric microbiota on PC function remains largely unknown.
Purpose of the Study:
- To investigate the impact of the enteric microbiota on PC biology in the mouse small intestine.
- To assess effects on epithelial proliferation, intestinal stem cell (ISC) numbers, and AMP production.
Main Methods:
- Comparison of jejunal PCs in germ-free (GF) versus conventionally raised (CR) mice.
- Evaluation of epithelial proliferation, ISC counts, and AMP expression (specifically Reg3γ).
- Analysis of CR versus GF enteroids cultured with bacterial ligands.
Main Results:
- PC numbers were significantly higher in CR mice compared to GF mice.
- No significant differences in ISC numbers or proliferation were observed between GF and CR mice.
- Reg3γ transcript expression was elevated in CR mice, but this effect was lost in cultured enteroids and not induced by bacterial ligands.
Conclusions:
- The enteric microbiota regulates PC numbers and induces Reg3γ expression, but potentially indirectly.
- The microbiota does not significantly influence jejunal ISC numbers or proliferation.
- Findings are crucial for researchers using germ-free models and enteroids to study PC and ISC biology.
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