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In vitro tRNA Methylation Assay with the Entamoeba histolytica DNA and tRNA Methyltransferase Dnmt2 Ehmeth Enzyme
Published on: October 19, 2010
DENR-MCTS1 heterodimerization and tRNA recruitment are required for translation reinitiation
Yasar Luqman Ahmed1, Sibylle Schleich2,3, Jonathan Bohlen2,3
1Heidelberg University Biochemistry Center (BZH), Heidelberg, Germany.
Abstract:
The succession of molecular events leading to eukaryotic translation reinitiation-whereby ribosomes terminate translation of a short open reading frame (ORF), resume scanning, and then translate a second ORF on the same mRNA-is not well understood. Density-regulated reinitiation and release factor (DENR) and multiple copies in T-cell lymphoma-1 (MCTS1) are implicated in promoting translation reinitiation both in vitro in translation extracts and in vivo. We present here the crystal structure of MCTS1 bound to a fragment of DENR. Based on this structure, we identify and experimentally validate that DENR residues Glu42, Tyr43, and Tyr46 are important for MCTS1 binding and that MCTS1 residue Phe104 is important for tRNA binding. Mutation of these residues reveals that DENR-MCTS1 dimerization and tRNA binding are both necessary for DENR and MCTS1 to promote translation reinitiation in human cells. These findings thereby link individual residues of DENR and MCTS1 to specific molecular functions of the complex. Since DENR-MCTS1 can bind tRNA in the absence of the ribosome, this suggests the DENR-MCTS1 complex could recruit tRNA to the ribosome during reinitiation analogously to the eukaryotic initiation factor 2 (eIF2) complex in cap-dependent translation.
Insights
Density-regulated reinitiation and release factor (DENR) and multiple copies in T-cell lymphoma-1 (MCTS1) are crucial for eukaryotic translation reinitiation. Specific DENR and MCTS1 residues are essential for complex formation and tRNA binding, enabling ribosome reinitiation.
Area of Science:
- Molecular Biology
- Structural Biology
- Biochemistry
Background:
- Eukaryotic translation reinitiation is a complex process involving ribosome scanning and translation of downstream ORFs.
- Density-regulated reinitiation and release factor (DENR) and multiple copies in T-cell lymphoma-1 (MCTS1) are known to promote translation reinitiation.
Purpose of the Study:
- To elucidate the structural basis of DENR-MCTS1 interaction and its role in translation reinitiation.
- To identify key residues in DENR and MCTS1 essential for complex formation and function.
Main Methods:
- X-ray crystallography to determine the structure of MCTS1 bound to a DENR fragment.
- Site-directed mutagenesis to investigate the functional importance of specific amino acid residues.
- In vivo assays in human cells to assess the impact on translation reinitiation.
Main Results:
- The crystal structure revealed MCTS1 bound to a DENR fragment, highlighting specific interaction interfaces.
- DENR residues Glu42, Tyr43, and Tyr46 were identified as critical for MCTS1 binding.
- MCTS1 residue Phe104 was found to be essential for tRNA binding.
- Mutational analysis confirmed that both DENR-MCTS1 dimerization and tRNA binding are necessary for promoting translation reinitiation.
Conclusions:
- Specific amino acid residues in DENR and MCTS1 directly link to their molecular functions in the complex.
- The DENR-MCTS1 complex can bind tRNA independently of the ribosome, suggesting a role in recruiting tRNA during reinitiation.
- This mechanism may be analogous to the function of the eukaryotic initiation factor 2 (eIF2) complex in cap-dependent translation.
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