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Updated: Feb 9, 2026

Studying Triple Negative Breast Cancer Using Orthotopic Breast Cancer Model
Published on: March 20, 2020
TET1-Mediated Hypomethylation Activates Oncogenic Signaling in Triple-Negative Breast Cancer
Charly Ryan Good1, Shoghag Panjarian1, Andrew D Kelly1
1Fels Institute for Cancer Research and Molecular Biology, Lewis Katz School of Medicine at Temple University, Philadelphia, Pennsylvania.
Abstract:
Both gains and losses of DNA methylation are common in cancer, but the factors controlling this balance of methylation remain unclear. Triple-negative breast cancer (TNBC), a subtype that does not overexpress hormone receptors or HER2/NEU, is one of the most hypomethylated cancers observed. Here, we discovered that the TET1 DNA demethylase is specifically overexpressed in about 40% of patients with TNBC, where it is associated with hypomethylation of up to 10% of queried CpG sites and a worse overall survival. Through bioinformatic analyses in both breast and ovarian cancer cell line panels, we uncovered an intricate network connecting TET1 to hypomethylation and activation of cancer-specific oncogenic pathways, including PI3K, EGFR, and PDGF. TET1 expression correlated with sensitivity to drugs targeting the PI3K-mTOR pathway, and CRISPR-mediated deletion of TET1 in two independent TNBC cell lines resulted in reduced expression of PI3K pathway genes, upregulation of immune response genes, and substantially reduced cellular proliferation, suggesting dependence of oncogenic pathways on TET1 overexpression. Our work establishes TET1 as a potential oncogene that contributes to aberrant hypomethylation in cancer and suggests that TET1 could serve as a druggable target for therapeutic intervention.Significance: This study addresses a critical gap in knowledge of how and why methylation is prognostic in breast cancer and shows how this information can be used to stratify patients with TNBC for targeted therapy. Cancer Res; 78(15); 4126-37. ©2018 AACR.
Insights
The TET1 DNA demethylase is overexpressed in triple-negative breast cancer (TNBC), promoting hypomethylation and activating oncogenic pathways. TET1 inhibition may offer a new therapeutic strategy for TNBC patients.
Area of Science:
- Epigenetics
- Cancer Biology
- Genomics
Background:
- DNA methylation patterns are altered in cancer, but the mechanisms controlling this dysregulation are not fully understood.
- Triple-negative breast cancer (TNBC) is characterized by significant hypomethylation.
- The role of TET1 DNA demethylase in TNBC pathogenesis and its prognostic implications require further investigation.
Purpose of the Study:
- To investigate the role of TET1 DNA demethylase in triple-negative breast cancer (TNBC).
- To explore the association between TET1 expression, DNA hypomethylation, and oncogenic pathway activation in TNBC.
- To evaluate TET1 as a potential therapeutic target for TNBC.
Main Methods:
- Bioinformatic analyses of TET1 expression in TNBC patient data and cancer cell line panels.
- Correlation analysis of TET1 levels with CpG methylation status and patient survival.
- CRISPR-mediated gene editing to assess the functional impact of TET1 deletion in TNBC cell lines.
- Analysis of oncogenic and immune gene expression in response to TET1 modulation.
Main Results:
- TET1 is overexpressed in approximately 40% of TNBC cases, correlating with widespread hypomethylation and poorer survival.
- TET1 overexpression is linked to the activation of key oncogenic pathways, including PI3K, EGFR, and PDGF.
- TET1 deletion in TNBC cells reduced PI3K pathway gene expression, increased immune response genes, and decreased proliferation.
- TET1 expression correlated with sensitivity to PI3K-mTOR pathway inhibitors.
Conclusions:
- TET1 acts as a potential oncogene in TNBC, driving aberrant hypomethylation and promoting cancer progression.
- Targeting TET1 may represent a viable therapeutic strategy for a subset of TNBC patients.
- Understanding the TET1-mediated epigenetic landscape is crucial for developing targeted therapies in breast cancer.
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