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Updated: Feb 9, 2026

Methyl-binding DNA capture Sequencing for Patient Tissues
Published on: October 31, 2016
A noncanonical PPARγ/RXRα-binding sequence regulates leptin expression in response to changes in adipose tissue mass
Yinxin Zhang1,2, Olof Stefan Dallner1, Tomoyoshi Nakadai3
1Laboratory of Molecular Genetics, The Rockefeller University, New York, NY 10065.
A newly identified DNA element, LepRE1, is crucial for quantitatively regulating leptin gene expression in fat cells. This element ensures leptin levels change appropriately with fat mass alterations, impacting obesity and fat loss responses.
Area of Science:
- Molecular Endocrinology
- Genomics and Gene Regulation
Background:
- Leptin, a hormone regulating fat mass, exhibits altered expression during obesity and fat loss.
- Previous studies identified leptin enhancer 1 (LE1) for fat-specific expression but failed to explain quantitative changes.
- Accurate leptin regulation is vital for maintaining energy homeostasis and controlling adipose tissue mass.
Purpose of the Study:
- To identify novel regulatory elements responsible for the quantitative control of leptin gene expression.
- To investigate the role of identified elements in mediating leptin's response to changes in adipose mass.
- To understand the molecular mechanisms underlying leptin's quantitative regulation in adipocytes.
Main Methods:
- Assay for transposase-accessible chromatin with high-throughput sequencing (ATAC-seq) to identify regulatory regions.
- Site-directed mutagenesis within the leptin enhancer 1 (LE1) region in bacterial artificial chromosome transgenic (BACTG) reporter mice.
- Analysis of reporter gene (luciferase) expression in response to dietary changes (food restriction) and genetic models of obesity (ob/ob mice).
Main Results:
- ATAC-seq identified a novel 17-bp peroxisome proliferator-activated receptor gamma (PPARγ)/retinoid X receptor alpha (RXRα)-binding site, termed leptin regulatory element 1 (LepRE1), within LE1.
- Mutating the LepRE1 site abolished the quantitative changes in reporter gene expression associated with weight loss and obesity.
- Fat-specific expression was retained, but the dynamic regulation of leptin levels was impaired, indicating LepRE1's role in quantitative control.
- A similar functional LepRE1 site was found in a redundant regulatory element downstream of the transcription start site.
Conclusions:
- The LepRE1 element is essential for the fat-regulated, quantitative control of leptin expression, distinct from mechanisms controlling fat-specific expression.
- LepRE1 acts as a critical mediator in the leptin gene's response to alterations in adipose tissue mass.
- These findings suggest LepRE1-binding factors are key components of a lipid-sensing system in adipocytes that quantitatively regulate leptin.
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