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Updated: Feb 9, 2026

Monitoring Stub1-Mediated Pexophagy
Published on: May 12, 2023
Dual role of USP30 in controlling basal pexophagy and mitophagy
Elena Marcassa1, Andreas Kallinos1, Jane Jardine1
1Cellular and Molecular Physiology, Institute of Translational Medicine, University of Liverpool, Liverpool, UK.
Abstract:
USP30 is an integral protein of the outer mitochondrial membrane that counteracts PINK1 and Parkin-dependent mitophagy following acute mitochondrial depolarisation. Here, we use two distinct mitophagy reporter systems to reveal tonic suppression by USP30, of a PINK1-dependent component of basal mitophagy in cells lacking detectable Parkin. We propose that USP30 acts upstream of PINK1 through modulation of PINK1-substrate availability and thereby determines the potential for mitophagy initiation. We further show that a fraction of endogenous USP30 is independently targeted to peroxisomes where it regulates basal pexophagy in a PINK1- and Parkin-independent manner. Thus, we reveal a critical role of USP30 in the clearance of the two major sources of ROS in mammalian cells and in the regulation of both a PINK1-dependent and a PINK1-independent selective autophagy pathway.
Insights
Ubiquitin-specific protease 30 (USP30) protein suppresses mitophagy and pexophagy, crucial cellular clearance pathways. USP30 regulates both PINK1-dependent and independent selective autophagy, impacting reactive oxygen species (ROS) levels.
Area of Science:
- Cell Biology
- Molecular Biology
- Autophagy Research
Background:
- USP30 is an outer mitochondrial membrane protein.
- It counteracts PINK1/Parkin-dependent mitophagy.
- Mitophagy is essential for clearing damaged mitochondria.
Purpose of the Study:
- To investigate USP30's role in basal mitophagy.
- To explore USP30's function in Parkin-deficient cells.
- To determine USP30's involvement in peroxisome clearance (pexophagy).
Main Methods:
- Utilized two distinct mitophagy reporter systems.
- Analyzed USP30 localization in mammalian cells.
- Investigated PINK1 and Parkin-independent pathways.
Main Results:
- USP30 tonically suppresses a PINK1-dependent mitophagy component.
- USP30 acts upstream of PINK1, modulating substrate availability.
- A fraction of USP30 targets peroxisomes, regulating pexophagy independently of PINK1/Parkin.
Conclusions:
- USP30 plays a critical role in clearing major reactive oxygen species (ROS) sources.
- USP30 regulates both PINK1-dependent mitophagy and PINK1-independent pexophagy.
- USP30 is a key regulator of selective autophagy pathways.
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