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Updated: Feb 9, 2026

Mass Spectrometry-Guided Genome Mining as a Tool to Uncover Novel Natural Products
Published on: March 12, 2020
Accessing Bioactive Natural Products from the Human Microbiome.
Aleksandr Milshteyn1, Dominic A Colosimo1, Sean F Brady1
1Laboratory of Genetically Encoded Small Molecules, Rockefeller University, 1230 York Avenue, New York, NY 10065, USA.
Natural products from the human microbiome offer therapeutic potential. Historical methods for discovering bacterial compounds are now guiding research into these microbes for new drug development.
Area of Science:
- Microbiology
- Pharmacology
- Biochemistry
Background:
- Natural products have historically been crucial for developing therapeutics.
- Soil and marine environments have been traditional sources of diverse chemical scaffolds.
- The human microbiome is an emerging source of novel secondary metabolites with therapeutic promise.
Purpose of the Study:
- To review how established methods for natural product discovery inform the study of the human microbiota.
- To explore the potential of human-associated bacteria in drug discovery.
- To highlight how these approaches can elucidate microbe-microbe and host-microbe interactions.
Main Methods:
- Leveraging historical natural product discovery techniques.
- Applying these techniques to the human microbiome.
- Analyzing microbial metabolites and their interactions.
Main Results:
- The human microbiome represents a significant, underexplored reservoir for therapeutic natural products.
- Established methodologies are effective in identifying bioactive compounds from microbiota.
- Insights into microbial interactions can guide the development of novel therapeutic strategies.
Conclusions:
- The study of the human microbiome, informed by a rich history of natural product research, holds significant potential for discovering new therapeutics.
- Understanding host-microbe and microbe-microbe interactions within the microbiome is key to unlocking new therapeutic modalities.
- This review bridges traditional natural product discovery with modern microbiome research, paving the way for future drug development.
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