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Updated: Feb 8, 2026

Quantifying Microglia Morphology from Photomicrographs of Immunohistochemistry Prepared Tissue Using ImageJ
Published on: June 5, 2018
Microglia morphology in the physiological and diseased brain - from fixed tissue to in vivo conditions
Laura Stopper1, Tudor Adrian Bălşeanu, Bogdan Cătălin
1Department of Functional Sciences, Experimental Research Center for Normal and Pathological Aging, University of Medicine and Pharmacy of Craiova, Romania; bogdan.catalin@umfcv.ro; Department of Molecular Physiology, Center for Integrative Physiology and Molecular Medicine (CIPMM), University of Saarland, Homburg, Germany; anja.scheller@uks.eu.
Abstract:
First mentioned almost 100 years ago, neuroresearch has linked microglia to the initiation and/or maintenance of most central nervous system pathologies. Since their discovery, we learned that the microglia immune status is often correlated directly to their morphology. However, only recently, have we realized that, in vivo microglia are extremely dynamic cells capable to respond within minutes. Therefore, the name "resting" microglia is replaced slowly with surveilling microglia. Even more recent, it has been shown that microglia change their morphology and/or immune status depending on the way the tissue is obtained, processed and imaged, making labeling microglia, based on their morphology alone, as active or surveying even more difficult. All these observations correlated with a better understanding of cellular and subcellular process that microglia undergo in pathological conditions, could have profound implications on the time window and/or targets used to ensure the best outcome, when treating brain disease.
Insights
Microglia, immune cells in the brain, are dynamic and rapidly respond to changes. Their appearance can be misleading, impacting how we understand and treat central nervous system diseases.
Area of Science:
- Neuroscience
- Immunology
- Cell Biology
Background:
- Microglia, the primary immune cells of the central nervous system (CNS), have been implicated in numerous CNS pathologies for nearly a century.
- Historically, microglia's immune status was inferred from their morphology, but recent findings reveal their dynamic nature and rapid in vivo responses.
- The term 'resting' microglia is being supplanted by 'surveilling' microglia to reflect their active monitoring role.
Purpose of the Study:
- To highlight the dynamic nature of microglia and their rapid responses within the central nervous system.
- To address the challenges in classifying microglia based solely on morphology due to tissue processing artifacts.
- To underscore the implications of microglia's dynamic behavior for therapeutic strategies in brain diseases.
Main Methods:
- Review of recent neuroresearch findings on microglia behavior in vivo.
- Analysis of studies investigating the influence of tissue acquisition and processing on microglia morphology and immune status.
- Correlation of cellular and subcellular processes in microglia during pathological conditions.
Main Results:
- Microglia are highly dynamic cells capable of responding within minutes, challenging the 'resting' state concept.
- Microglia morphology and immune status are significantly influenced by experimental procedures (tissue processing, imaging).
- Classifying microglia as 'active' or 'surveying' based on morphology alone is problematic.
Conclusions:
- A deeper understanding of microglia's dynamic behavior and the impact of experimental variables is crucial.
- The plasticity of microglia necessitates a re-evaluation of their role in CNS pathologies.
- Optimizing therapeutic interventions for brain diseases may depend on targeting specific microglia states and understanding critical time windows.
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