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Isolation, Characterization, and Total DNA Extraction to Identify Endophytic Fungi in Mycoheterotrophic Plants
Published on: May 5, 2023
Endophytic Fungi: A Source of Potential Antifungal Compounds
Sunil K Deshmukh1, Manish K Gupta2, Ved Prakash3
1TERI-Deakin Nano Biotechnology Centre, The Energy and Resources Institute (TERI), Darbari Seth Block, IHC Complex, Lodhi Road, New Delhi 110003, India. sunil.deshmukh@teri.res.in.
Abstract:
The emerging and reemerging forms of fungal infections encountered in the course of allogeneic bone marrow transplantations, cancer therapy, and organ transplants have necessitated the discovery of antifungal compounds with enhanced efficacy and better compatibility. A very limited number of antifungal compounds are in practice against the various forms of topical and systemic fungal infections. The trends of new antifungals being introduced into the market have remained insignificant while resistance towards the introduced drug has apparently increased, specifically in patients undergoing long-term treatment. Considering the immense potential of natural microbial products for the isolation and screening of novel antibiotics for different pharmaceutical applications as an alternative source has remained largely unexplored. Endophytes are one such microbial community that resides inside all plants without showing any symptoms with the promise of producing diverse bioactive molecules and novel metabolites which have application in medicine, agriculture, and industrial set ups. This review substantially covers the antifungal compounds, including volatile organic compounds, isolated from fungal endophytes of medicinal plants during 2013⁻2018. Some of the methods for the activation of silent biosynthetic genes are also covered. As such, the compounds described here possess diverse configurations which can be a step towards the development of new antifungal agents directly or precursor molecules after the required modification.
Insights
Fungal infections are rising, especially in immunocompromised patients. This review explores antifungal compounds from plant-associated microbes (endophytes) as a promising alternative to existing treatments.
Area of Science:
- Microbiology and Medicinal Chemistry
- Natural Products Research
Background:
- Rising incidence of emergent and reemergent fungal infections in immunocompromised patients (bone marrow transplant, cancer therapy, organ transplant recipients).
- Limited efficacy and increasing drug resistance associated with current antifungal therapies.
- Unmet need for novel antifungal agents with improved efficacy and compatibility.
Purpose of the Study:
- To review antifungal compounds, including volatile organic compounds (VOCs), isolated from fungal endophytes of medicinal plants.
- To cover methods for activating silent biosynthetic genes in endophytes.
- To highlight the potential of endophytes as a source for novel antifungal drug discovery.
Main Methods:
- Literature review of studies published between 2013 and 2018 focusing on antifungal compounds from fungal endophytes.
- Inclusion of methods related to the activation of silent biosynthetic gene clusters.
- Analysis of the chemical diversity and configurations of isolated antifungal compounds.
Main Results:
- Identification of diverse antifungal compounds, including volatile organic compounds, derived from fungal endophytes of medicinal plants.
- Documentation of various strategies for enhancing the production of bioactive metabolites from endophytes.
- Characterization of compounds with potential for direct use or as precursors for new antifungal agents.
Conclusions:
- Fungal endophytes represent a largely untapped reservoir of novel bioactive molecules with significant antifungal potential.
- The reviewed compounds and activation methods offer promising avenues for developing new antifungal therapies.
- Further research into endophyte-derived metabolites is crucial for addressing the challenge of antifungal resistance.
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