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HmmUFOtu: An HMM and phylogenetic placement based ultra-fast taxonomic assignment and OTU picking tool for microbiome

Qi Zheng1, Casey Bartow-McKenney2, Jacquelyn S Meisel2

  • 1Department of Dermatology and Microbiology, Perelman School of Medicine, University of Pennsylvania, 421 Curie Blvd, BRB 1046/7, Philadelphia, PA, 19104, USA. zhengqi@pennmedicine.upenn.edu.

Genome Biology
|June 29, 2018
PubMed

Keywords:
16S rRNA geneDNA substitution modelsDirichlet modelsFM-indexHMM profile alignmentMicrobiomeOperational taxonomic unitPhylogenetic placementTaxonomic assignment

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