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Updated: Feb 8, 2026

Drug Repurposing Hypothesis Generation Using the "RE:fine Drugs" System
Published on: December 11, 2016
Gene expression-based drug repurposing to target aging
Handan Melike Dönertaş1, Matías Fuentealba Valenzuela1,2, Linda Partridge2,3
1European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.
Abstract:
Aging is the largest risk factor for a variety of noncommunicable diseases. Model organism studies have shown that genetic and chemical perturbations can extend both lifespan and healthspan. Aging is a complex process, with parallel and interacting mechanisms contributing to its aetiology, posing a challenge for the discovery of new pharmacological candidates to ameliorate its effects. In this study, instead of a target-centric approach, we adopt a systems level drug repurposing methodology to discover drugs that could combat aging in human brain. Using multiple gene expression data sets from brain tissue, taken from patients of different ages, we first identified the expression changes that characterize aging. Then, we compared these changes in gene expression with drug-perturbed expression profiles in the Connectivity Map. We thus identified 24 drugs with significantly associated changes. Some of these drugs may function as antiaging drugs by reversing the detrimental changes that occur during aging, others by mimicking the cellular defence mechanisms. The drugs that we identified included significant number of already identified prolongevity drugs, indicating that the method can discover de novo drugs that meliorate aging. The approach has the advantages that using data from human brain aging data, it focuses on processes relevant in human aging and that it is unbiased, making it possible to discover new targets for aging studies.
Insights
This study used a systems-level drug repurposing approach to identify drugs combating aging in the human brain. Researchers found 24 drugs that may reverse aging effects or mimic cellular defenses, offering new avenues for longevity research.
Area of Science:
- Gerontology and Pharmacology
- Neuroscience and Computational Biology
Background:
- Aging is the primary risk factor for numerous noncommunicable diseases.
- Genetic and chemical interventions in model organisms can extend lifespan and healthspan.
- Aging's complexity and interacting mechanisms challenge the discovery of anti-aging drugs.
Purpose of the Study:
- To discover drugs that combat aging in the human brain using a systems-level drug repurposing methodology.
- To identify pharmacological candidates by analyzing age-related gene expression changes in human brain tissue.
- To move beyond target-centric approaches by employing a data-driven, systems-level strategy.
Main Methods:
- Utilized multiple human brain gene expression datasets from individuals of varying ages.
- Identified gene expression patterns characteristic of aging.
- Compared aging-associated gene expression changes with drug-perturbed profiles in the Connectivity Map database.
Main Results:
- Identified 24 drugs significantly associated with age-related gene expression changes.
- Discovered drugs that may reverse detrimental aging effects or mimic cellular defense mechanisms.
- Validated the approach by finding known prolongevity drugs among the identified candidates, suggesting de novo drug discovery potential.
Conclusions:
- The systems-level drug repurposing approach effectively identifies potential anti-aging drugs for the human brain.
- This unbiased methodology, using human brain aging data, focuses on relevant biological processes.
- The findings open possibilities for discovering novel therapeutic targets for aging and age-related diseases.
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