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Published on: June 1, 2019
The rabbit as an orthologous small animal model for APOBEC3A oncogenesis
Hélène C Laude1, Vincent Caval1, Mohamed S Bouzidi1
1Molecular Retrovirology Unit, Institut Pasteur, CNRS UMR 3569, France.
Abstract:
APOBEC3 are cytidine deaminases that convert cytidine to uridine residues. APOBEC3A and APOBEC3B enzymes able to target genomic DNA are involved in oncogenesis of a sizeable proportion of human cancers. While the APOBEC3 locus is conserved in mammals, it encodes from 1-7 genes. APOBEC3A is conserved in most mammals, although absent in pigs, cats and throughout Rodentia whereas APOBEC3B is restricted to the Primate order. Here we show that the rabbit APOBEC3 locus encodes two genes of which APOBEC3A enzyme is strictly orthologous to human APOBEC3A. The rabbit enzyme is expressed in the nucleus and the cytoplasm, it can deaminate cytidine, 5-methcytidine residues, nuclear DNA and induce double-strand DNA breaks. The rabbit APOBEC3A enzyme is negatively regulated by the rabbit TRIB3 pseudokinase protein which is guardian of genome integrity, just like its human counterpart. This indicates that the APOBEC3A/TRIB3 pair is conserved over approximately 100 million years. The rabbit APOBEC3A gene is widely expressed in rabbit tissues, unlike human APOBEC3A. These data demonstrate that rabbit could be used as a small animal model for studying APOBEC3 driven oncogenesis.
Insights
Researchers identified a rabbit APOBEC3A enzyme, crucial in cancer development, which is conserved with humans. This finding suggests rabbits are a valuable model for studying APOBEC3-driven oncogenesis.
Area of Science:
- Molecular Biology
- Genetics
- Oncology
Background:
- APOBEC3 enzymes are cytidine deaminases involved in human oncogenesis.
- The APOBEC3 locus varies across mammals, with APOBEC3A and APOBEC3B having distinct conservation patterns.
- Understanding APOBEC3 function requires suitable animal models.
Purpose of the Study:
- To characterize the rabbit APOBEC3 locus and its encoded enzymes.
- To investigate the functional conservation and regulatory mechanisms of rabbit APOBEC3A.
- To evaluate the potential of rabbits as a model for APOBEC3-driven oncogenesis.
Main Methods:
- Bioinformatic analysis of the rabbit APOBEC3 locus.
- Biochemical assays to determine the enzymatic activity of rabbit APOBEC3A.
- Expression analysis in rabbit tissues.
- Interaction studies with rabbit TRIB3.
Main Results:
- The rabbit APOBEC3 locus encodes two genes, including an APOBEC3A ortholog of human APOBEC3A.
- Rabbit APOBEC3A deaminates DNA, induces double-strand breaks, and is regulated by TRIB3, similar to its human counterpart.
- Unlike human APOBEC3A, rabbit APOBEC3A is widely expressed across rabbit tissues.
Conclusions:
- The APOBEC3A/TRIB3 regulatory pair is conserved over 100 million years.
- Rabbit APOBEC3A exhibits functional similarities and differences compared to human APOBEC3A.
- The broad expression of rabbit APOBEC3A supports its utility as a small animal model for studying APOBEC3-driven oncogenesis.
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