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Allosteric Inhibitor of KRas Identified Using a Barcoded Assay Microchip Platform
Amy M McCarthy1, Jungwoo Kim1, A Katrine Museth1
1The Arthur Amos Noyes Laboratory of Chemical Physics, Division of Chemistry and Chemical Engineering , California Institute of Technology , Pasadena , California 91125 , United States.
We developed a rapid assay platform using barcoded microchips for screening protein-catalyzed capture agents (PCCs). This high-throughput method significantly reduces time and reagents for analyzing PCC candidates targeting KRas proteins.
Area of Science:
- Biotechnology
- Molecular Biology
- Assay Development
Background:
- Protein-catalyzed capture agents (PCCs) are synthetic antibody alternatives for protein targeting.
- Developing high-throughput screening methods is crucial for advancing PCC technology.
Purpose of the Study:
- To create a barcoded rapid assay platform for analyzing PCC library screen hits.
- To evaluate candidate PCC ligands targeting conserved allosteric switch regions of KRas protein.
Main Methods:
- Surface patterning of micrometer-scale DNA barcodes on glass slides within microwells.
- Assembly of biotinylated PCCs onto DNA barcodes using a streptavidin library.
- Simultaneous evaluation of multiple PCC candidates under diverse assay conditions on a single microchip.
Main Results:
- The platform enabled simultaneous evaluation of 15 PCC candidate fractions under numerous assay conditions.
- Achieved over 10-fold time savings and over 100-fold reduction in reagents compared to traditional assays.
- Identified a lead PCC ligand with an in vitro inhibition constant (IC50) of approximately 24 μM against KRas.
Conclusions:
- The barcoded rapid assay platform facilitates high-throughput analysis of PCC library screens.
- This platform offers significant advantages in efficiency and resource conservation.
- Demonstrated the utility of PCCs for targeting specific protein regions, exemplified by KRas allosteric switch regions.
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