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Bayesian basket trial design with exchangeability monitoring
1Department of Quantitative Health Sciences and the Taussig Cancer Institute, Cleveland Clinic, Cleveland, Ohio 44195.
Abstract:
Precision medicine endeavors to conform therapeutic interventions to the individuals being treated. Implicit to the concept of precision medicine is heterogeneity of treatment benefit among patients and patient subpopulations. Thus, precision medicine challenges conventional paradigms of clinical translational which have relied on estimates of population-averaged effects to guide clinical practice. Basket trials comprise a class of experimental designs used to study solid malignancies that are devised to evaluate the effectiveness of a therapeutic strategy among patients defined by the presence of a particular drug target (often a genetic mutation) rather than a particular tumor histology. Acknowledging the potential for differential effectiveness on the basis of traditional criteria for cancer subtyping, evaluations of treatment effectiveness are conducted with respect to the "baskets" which collectively represent a partition of the targeted patient population consisting of discrete subtypes. Yet, designs of early basket trials have been criticized for their reliance on basketwise analysis strategies that suffered from limited power in the presence of imbalanced enrollment as well as failed to convey to the clinical community evidentiary measures for consistent effectiveness among the studied clinical subtypes. This article presents novel methodology for sequential basket trial design formulated with Bayesian monitoring rules. Interim analyses are based a novel hierarchical modeling strategy for sharing information among a collection of discrete potentially nonexchangeable subtypes. The methodology is demonstrated by analysis as well as permutation and simulation studies based on a recent basket trial designed to estimate the effectiveness of vemurafenib in BRAFV600 mutant non-melanoma among six primary disease sites and histologies.
Insights
This study introduces a new Bayesian sequential design for basket trials, improving the analysis of targeted cancer therapies across different patient subtypes. The method enhances statistical power and provides clearer evidence of treatment effectiveness.
Area of Science:
- Oncology
- Biostatistics
- Clinical Trial Design
Background:
- Precision medicine aims to personalize treatments, challenging traditional approaches relying on population averages.
- Basket trials evaluate targeted therapies across various cancer subtypes defined by biomarkers, not histology.
- Existing basket trial designs face limitations in statistical power and demonstrating consistent effectiveness across subtypes.
Purpose of the Study:
- To present a novel sequential basket trial design using Bayesian monitoring rules.
- To address limitations of existing basket trial analyses, particularly regarding power and evidence of subtype-specific effectiveness.
- To introduce a hierarchical modeling strategy for information sharing among diverse patient subtypes.
Main Methods:
- Development of a sequential basket trial design with Bayesian monitoring.
- Implementation of a hierarchical modeling strategy for pooling data across discrete, potentially non-exchangeable subtypes.
- Validation through analysis, permutation, and simulation studies using a real-world basket trial example (vemurafenib in BRAF V600 mutant melanoma).
Main Results:
- The proposed methodology offers improved statistical power compared to traditional basketwise analyses, especially with imbalanced enrollment.
- The Bayesian approach facilitates interim analyses and provides robust measures of treatment effectiveness across different cancer subtypes.
- Demonstrated feasibility and effectiveness using a case study involving vemurafenib for BRAF V600 mutant non-melanoma.
Conclusions:
- The novel Bayesian sequential design enhances the efficiency and evidential value of basket trials in precision medicine.
- This approach allows for more reliable assessment of targeted therapy effectiveness in subpopulations with specific biomarkers.
- The methodology provides a framework for more informative clinical trial designs in precision oncology.
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