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Updated: Feb 7, 2026

Mitochondrial Isolation from Skeletal Muscle
Published on: March 30, 2011
Subcellular origin of mitochondrial DNA deletions in human skeletal muscle
Amy E Vincent1, Hannah S Rosa1, Kamil Pabis1
1Wellcome Centre for Mitochondrial Research and Newcastle Centre for Ageing and Vitality, Institute of Neuroscience, Newcastle University, Newcastle upon Tyne, United Kingdom.
Objective:
In patients with mitochondrial DNA (mtDNA) maintenance disorders and with aging, mtDNA deletions sporadically form and clonally expand within individual muscle fibers, causing respiratory chain deficiency. This study aimed to identify the sub-cellular origin and potential mechanisms underlying this process.
Methods:
Serial skeletal muscle cryosections from patients with multiple mtDNA deletions were subjected to subcellular immunofluorescent, histochemical, and genetic analysis.
Results:
We report respiratory chain-deficient perinuclear foci containing mtDNA deletions, which show local elevations of both mitochondrial mass and mtDNA copy number. These subcellular foci of respiratory chain deficiency are associated with a local increase in mitochondrial biogenesis and unfolded protein response signaling pathways. We also find that the commonly reported segmental pattern of mitochondrial deficiency is consistent with the three-dimensional organization of the human skeletal muscle mitochondrial network.
Interpretation:
We propose that mtDNA deletions first exceed the biochemical threshold causing biochemical deficiency in focal regions adjacent to the myonuclei, and induce mitochondrial biogenesis before spreading across the muscle fiber. These subcellular resolution data provide new insights into the possible origin of mitochondrial respiratory chain deficiency in mitochondrial myopathy. Ann Neurol 2018;84:289-301.
Insights
Mitochondrial DNA deletions originate near muscle cell nuclei, causing respiratory chain deficiency. This process involves increased mitochondrial biogenesis and may explain mitochondrial myopathy.
Area of Science:
- Cellular Biology
- Genetics
- Neurology
Background:
- Mitochondrial DNA (mtDNA) deletions accumulate in muscle fibers with age and in mtDNA maintenance disorders.
- These deletions lead to respiratory chain deficiency, impacting cellular energy production.
Purpose of the Study:
- To pinpoint the subcellular origin of mtDNA deletions.
- To elucidate the mechanisms driving their clonal expansion and impact on muscle fibers.
Main Methods:
- Analysis of skeletal muscle cryosections from patients with multiple mtDNA deletions.
- Utilized subcellular immunofluorescence, histochemistry, and genetic analysis.
Main Results:
- Identified respiratory chain-deficient perinuclear foci containing mtDNA deletions.
- Observed localized increases in mitochondrial mass, mtDNA copy number, and mitochondrial biogenesis.
- Found associations with unfolded protein response signaling pathways.
- Correlated findings with the three-dimensional mitochondrial network in skeletal muscle.
Conclusions:
- Propose that mtDNA deletions initiate in focal regions near myonuclei, triggering mitochondrial biogenesis before spreading.
- These findings offer novel insights into the subcellular origins of mitochondrial respiratory chain deficiency in mitochondrial myopathy.
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