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Automatic Methods to Extract New York Heart Association Classification from Clinical Notes
Rui Zhang1, Sisi Ma2, Liesa Shanahan3
1Institute for Health Informatics, and College of Pharmacy, University of Minnesota, Minneapolis, MN, USA.
Insights
Natural language processing (NLP) can accurately identify New York Heart Association (NYHA) classification from clinical notes for heart failure patients. This method aids in assessing Cardiac Resynchronization Therapy (CRT) effectiveness.
Area of Science:
- Biomedical Informatics
- Clinical Natural Language Processing
- Cardiology
Background:
- Cardiac Resynchronization Therapy (CRT) is a key treatment for heart failure.
- New York Heart Association (NYHA) classification assesses patient response to CRT.
- NYHA classification is often missing from structured Electronic Health Record (EHR) data, residing instead in unstructured clinical notes.
Purpose of the Study:
- To investigate the use of Natural Language Processing (NLP) methods for identifying NYHA classification from clinical notes.
- To enable consistent, longitudinal tracking of heart failure progression and CRT response assessment.
Main Methods:
- Collected 6,174 clinical notes.
- Matched notes with hospital-specific NYHA class diagnosis codes.
- Evaluated machine-learning (ML) methods, including support vector machine (SVM) with n-gram features, against a rule-based method.
Main Results:
- Machine-learning methods showed comparable performance to the rule-based method.
- The best performing method was Support Vector Machine (SVM) with n-gram features, achieving a 93% F-measure.
- NLP effectively extracts NYHA classification from unstructured clinical text.
Conclusions:
- NLP methods, particularly SVM with n-gram features, are effective for identifying NYHA classification from clinical notes.
- This approach can improve the assessment of heart failure progression and CRT effectiveness using EHR data.
- Further validation of these findings is warranted.
Abstract:
Cardiac Resynchronization Therapy (CRT) is an established pacing therapy for heart failure patients. The New York Heart Association (NYHA) classification is often used as a measure of a patient's response to CRT. Identifying NYHA class for heart failure patients in an electronic health record (EHR) consistently, over time, can provide better understanding of the progression of heart failure and assessment of CRT response and effectiveness. However, NYHA is rarely stored in EHR structured data such information is often documented in unstructured clinical notes. In this study, we thus investigated the use of natural language processing (NLP) methods to identify NYHA classification from clinical notes. We collected 6,174 clinical notes that were matched with hospital-specific custom NYHA class diagnosis codes. Machine-learning based methods performed similar with a rule-based method. The best machine-learning method, support vector machine with n-gram features, performed the best (93% F-measure). Further validation of the findings is required.
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