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Updated: Feb 7, 2026

Detection of Helicobacter pylori Infection and Antibiotic Resistance via Stool Quantitative Polymerase Chain Reaction Analysis
Published on: May 16, 2025
New fecal test for non-invasive Helicobacter pylori detection: A diagnostic accuracy study
Andrea Iannone1, Floriana Giorgio2, Francesco Russo3
1Section of Gastroenterology, Department of Emergency and Organ Transplantation, University of Bari, Bari 70124, Italy.
Insights
A new fecal test accurately detects Helicobacter pylori (H. pylori) infection non-invasively. This test also identifies antibiotic resistance, aiding treatment decisions for H. pylori.
Area of Science:
- Gastroenterology
- Infectious Diseases
- Diagnostic Microbiology
Background:
- Helicobacter pylori (H. pylori) infection is a significant cause of dyspepsia and peptic ulcer disease.
- Accurate and non-invasive diagnostic methods are crucial for timely H. pylori detection and management.
- Antibiotic resistance in H. pylori complicates treatment efficacy, necessitating resistance testing.
Purpose of the Study:
- To evaluate the diagnostic accuracy of a novel fecal test for H. pylori detection.
- To compare the fecal test's performance against the 13C-urea breath test as the reference standard.
- To assess the fecal test's capability in identifying H. pylori antibiotic resistance.
Main Methods:
- Prospective, two-center diagnostic accuracy study involving 294 adult participants with dyspepsia.
- Participants underwent 13C-urea breath test, and stool samples were collected for the THD fecal test.
- The THD fecal test detected H. pylori via 23S rRNA gene, and antibiotic resistance mutations (clarithromycin, levofloxacin) were analyzed.
Main Results:
- The THD fecal test demonstrated high diagnostic accuracy: sensitivity 90.2%, specificity 98.5%, and overall accuracy 95.9%.
- The test showed excellent agreement with the reference standard (13C-urea breath test and histology).
- Among infected participants, 41.0% exhibited resistance to clarithromycin, levofloxacin, or both.
Conclusions:
- The THD fecal test is a highly accurate, non-invasive tool for diagnosing H. pylori infection.
- The test offers the added benefit of simultaneously assessing H. pylori antibiotic resistance profiles.
- This dual capability can significantly improve patient management and guide appropriate antibiotic therapy.
Aim:
To assess the diagnostic accuracy of a new fecal test for detecting Helicobacter pylori (H. pylori), using13C-urea breath test as the reference standard, and explore bacterial antibiotic resistance.
Methods:
We conducted a prospective two-center diagnostic test accuracy study. We enrolled consecutive people≥ 18 years without previous diagnosis of H. pylori infection, referred for dyspepsia between February and October 2017. At enrollment, all participants underwent 13C-urea breath test. Participants aged over 50 years were scheduled to undergo upper endoscopy with histology. Participants collected stool samples 1-3 d after enrollment for a new fecal investigation (THD fecal test). The detection of bacterial 23S rRNA subunit gene indicated H. pylori infection. We also used the index diagnostic test to examine mutations conferring resistance to clarithromycin and levofloxacin. Independent investigators analyzed index test and reference test standard results blinded to the other test findings. We estimated sensitivity, specificity, positive (PPV) and negative (NPV) predictive value, diagnostic accuracy, positive and negative likelihood ratio (LR), together with 95% confidence intervals (CI).
Results:
We enrolled 294 consecutive participants (age: Median 37.0 years, IQR: 29.0-46.0 years; men: 39.8%). Ninety-five (32.3%) participants had a positive13C-urea breath test. Twenty-three (7.8%) participants underwent upper endoscopy with histology, with a full concordance between 13C-urea breath test and histology in detecting H. pylori infection. Four (1.4%) out of the 294 participants withdrew from the study after the enrollment visit and did not undergo THD fecal testing. In the 290 participants who completed the study, the THD fecal test sensitivity was 90.2% (CI: 84.2%-96.3%), specificity 98.5% (CI:96.8%-100%), PPV 96.5% (CI: 92.6%-100%), NPV 95.6% (CI: 92.8%-98.4%), accuracy 95.9% (CI: 93.6%-98.2%), positive LR 59.5(CI: 19.3-183.4), negative LR 0.10 (CI: 0.05-0.18). Out of 83 infected participants identified with the THD fecal test, 34 (41.0%) had bacterial genotypic changes consistent with antibiotic-resistant H. pylori infection. Of these, 27 (32.5%) had bacterial strains resistant to clarithromycin, 3 (3.6%) to levofloxacin, and 4 (4.8%) to both antibiotics.
Conclusion:
The THD fecal test has high performance for the non-invasive diagnosis of H. pylori infection while additionally enabling the assessment of bacterial antibiotic resistances.
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