Crystal structure of human Acinus RNA recognition motif domain

Humberto Fernandes1,2, Honorata Czapinska1, Katarzyna Grudziaz1

  • 1International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland.

Peerj
|July 26, 2018
PubMed

Insights

Acinus protein, crucial for apoptosis, is activated by cleavage. Its RNA recognition motif (RRM) domain structure reveals how it may bind RNA after activation.

Area of Science:

  • Molecular Biology
  • Structural Biology
  • Cell Biology

Background:

  • Acinus is a nuclear protein essential for apoptosis and RNA splicing.
  • It plays a role in chromatin condensation and DNA fragmentation during programmed cell death.
  • Activation involves proteolytic cleavage, yielding a truncated p17 form containing the RNA recognition motif (RRM) domain.

Purpose of the Study:

  • To determine the crystal structure of the human Acinus RRM domain (AcRRM).
  • To elucidate the structural basis for Acinus activation and potential RNA binding.

Main Methods:

  • X-ray crystallography was used to determine the structure of the human Acinus RRM domain.
  • Resolution of the crystal structure was 1.65 Å.
  • Structural comparisons were made with other RRM-RNA complex structures.

Main Results:

  • The AcRRM structure exhibits a canonical RRM fold with a four-stranded antiparallel β-sheet and flanking α-helices.
  • An additional C-terminal α-helix contains the caspase-3 cleavage site, crucial for Acinus activation.
  • This C-terminal helix partially blocks the RNA-binding surface, suggesting a regulatory role in RNA interaction.

Conclusions:

  • The crystal structure provides insights into the molecular mechanism of Acinus activation.
  • The C-terminal α-helix likely undergoes conformational changes to permit RNA binding post-cleavage.
  • This structural understanding is vital for comprehending Acinus function in apoptosis and gene regulation.

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