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Published on: November 30, 2018
Crystal structure of human Acinus RNA recognition motif domain
Humberto Fernandes1,2, Honorata Czapinska1, Katarzyna Grudziaz1
1International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland.
Abstract:
Acinus is an abundant nuclear protein involved in apoptosis and splicing. It has been implicated in inducing apoptotic chromatin condensation and DNA fragmentation during programmed cell death. Acinus undergoes activation by proteolytic cleavage that produces a truncated p17 form that comprises only the RNA recognition motif (RRM) domain. We have determined the crystal structure of the human Acinus RRM domain (AcRRM) at 1.65 Å resolution. It shows a classical four-stranded antiparallel β-sheet fold with two flanking α-helices and an additional, non-classical α-helix at the C-terminus, which harbors the caspase-3 target sequence that is cleaved during Acinus activation. In the structure, the C-terminal α-helix partially occludes the potential ligand binding surface of the β-sheet and hypothetically shields it from non-sequence specific interactions with RNA. Based on the comparison with other RRM-RNA complex structures, it is likely that the C-terminal α-helix changes its conformation with respect to the RRM core in order to enable RNA binding by Acinus.
Insights
Acinus protein, crucial for apoptosis, is activated by cleavage. Its RNA recognition motif (RRM) domain structure reveals how it may bind RNA after activation.
Area of Science:
- Molecular Biology
- Structural Biology
- Cell Biology
Background:
- Acinus is a nuclear protein essential for apoptosis and RNA splicing.
- It plays a role in chromatin condensation and DNA fragmentation during programmed cell death.
- Activation involves proteolytic cleavage, yielding a truncated p17 form containing the RNA recognition motif (RRM) domain.
Purpose of the Study:
- To determine the crystal structure of the human Acinus RRM domain (AcRRM).
- To elucidate the structural basis for Acinus activation and potential RNA binding.
Main Methods:
- X-ray crystallography was used to determine the structure of the human Acinus RRM domain.
- Resolution of the crystal structure was 1.65 Å.
- Structural comparisons were made with other RRM-RNA complex structures.
Main Results:
- The AcRRM structure exhibits a canonical RRM fold with a four-stranded antiparallel β-sheet and flanking α-helices.
- An additional C-terminal α-helix contains the caspase-3 cleavage site, crucial for Acinus activation.
- This C-terminal helix partially blocks the RNA-binding surface, suggesting a regulatory role in RNA interaction.
Conclusions:
- The crystal structure provides insights into the molecular mechanism of Acinus activation.
- The C-terminal α-helix likely undergoes conformational changes to permit RNA binding post-cleavage.
- This structural understanding is vital for comprehending Acinus function in apoptosis and gene regulation.
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