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The Medicago truncatula Genome: Genomic Data Availability.

David Burks1, Rajeev Azad1,2, Jiangqi Wen3

  • 1Department of Biological Sciences and BioDiscovery Institute, University of North Texas, Denton, TX, USA.

Methods in Molecular Biology (Clifton, N.J.)
|July 26, 2018
PubMed
Summary
This summary is machine-generated.

Medicago truncatula, a model legume, offers valuable genomic data for sustainable agriculture. This chapter guides researchers in accessing archived and current genomic resources for Medicago truncatula and other legumes.

Keywords:
DatabasesExpression dataGenome dataGenome sequenceMedicago truncatulaModel legumeSymbiotic nitrogen fixation

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Area of Science:

  • Plant genomics
  • Legume research
  • Sustainable agriculture

Background:

  • Medicago truncatula is a key model organism for legumes, the third largest land plant family.
  • Legumes are vital for global nitrogen cycling, sustainable agriculture, and as sources of protein and oils.
  • Extensive genetic and genomic resources are available for Medicago truncatula, including reference genome sequences.

Purpose of the Study:

  • To provide strategies for accessing archived Medicago truncatula genomic data from defunct custom databases.
  • To review current genomic databases, both Medicago truncatula-specific and those including its data alongside other plant species.
  • To ensure continued accessibility of Medicago truncatula genomic information for diverse research applications.

Main Methods:

  • Identifying and describing methods to retrieve archived genomic data.
  • Compiling and categorizing current Medicago truncatula genomic databases.
  • Discussing the integration of Medicago truncatula data within broader plant genomic resources.

Main Results:

  • Archived Medicago truncatula genomic data is now accessible through general public databases.
  • A comprehensive overview of currently maintained Medicago truncatula genomic databases is presented.
  • Strategies for navigating and utilizing these diverse data resources are outlined.

Conclusions:

  • Effective strategies ensure the accessibility of valuable Medicago truncatula genomic data for ongoing and future research.
  • The availability of curated genomic resources supports advancements in legume biology, crop improvement, and sustainable agricultural practices.
  • This work facilitates research by consolidating information on accessing and utilizing Medicago truncatula genomic data.