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Updated: Feb 7, 2026

Performing Data Mining And Integrative Analysis Of Biomarker in Breast Cancer Using Multiple Publicly Accessible Databases
Published on: May 17, 2019
MAT1 correlates with molecular subtypes and predicts poor survival in breast cancer
Hanxiao Xu1, Xianguang Bai2, Shengnan Yu1
1Department of Oncology, Tongji Hospital of Tongji Medical College, Huazhong University of Science and Technology, Wuhan 430030, China.
Objective:
Menage a trois 1 (MAT1) is a targeting subunit of cyclin-dependent kinase-activating kinase and general transcription factor IIH kinase, which modulates cell cycle, transcription and DNA repair. Its dysregulation is responsible for diseases including cancers. To further explore the role of MAT1 in breast cancer, we investigated the pathways in which MAT1 might be involved, the association between MAT1 and molecular subtypes, and the role of MAT1 in clinical outcomes of breast cancer patients.
Methods:
We conducted immunohistochemistry staining on tissue microarray and immunofluorescence staining on sections of MAT1 stable breast cancer cells. Also, we performed Kyoto Encyclopedia of Genes and Genomes pathway analysis, correlation analysis and prognosis analysis on public databases.
Results:
MAT1 was involved in multiple pathways including normal physiology signaling and disease-related signaling. Furthermore, MAT1 positively correlated with the protein status of estrogen receptor and progesterone receptor, and was enriched in luminal-type and human epidermal growth factor receptor 2-enriched breast cancer in comparison with basal-like subtype at both mRNA and protein levels. Correlation analysis revealed significant association between MAT1 mRNA amount and epithelial markers, mesenchymal markers, cancer stem cell markers, apoptosis markers, transcription markers and oncogenes. Consistently, the results of immunofluorescence stain indicated that MAT1 overexpression enhanced the protein abundance of epidermal growth factor receptor, vimentin, sex determining region Y-box 2 and sine oculis homeobox homolog 1. Importantly, Kaplan-Meier Plotter analysis reflected that MAT1 could serve as a prognostic biomarker predicting worse relapse-free survival and metastasis-free survival.
Conclusions:
MAT1 is correlated with molecular subtypes and is associated with unfavorable prognosis for breast cancer patients.
Insights
Menage a trois 1 (MAT1) protein is linked to breast cancer subtypes and indicates a worse prognosis. Higher MAT1 levels correlate with aggressive features and poorer survival outcomes in breast cancer patients.
Area of Science:
- Oncology
- Molecular Biology
- Cell Biology
Background:
- Menage a trois 1 (MAT1) is a key subunit of cyclin-dependent kinase-activating kinase and general transcription factor IIH kinase.
- MAT1 dysregulation is implicated in various diseases, including cancers, highlighting its critical role in cellular processes like cell cycle, transcription, and DNA repair.
Purpose of the Study:
- To investigate the role of MAT1 in breast cancer.
- To explore MAT1's involvement in specific signaling pathways.
- To determine the association between MAT1 expression, breast cancer molecular subtypes, and patient clinical outcomes.
Main Methods:
- Immunohistochemistry and immunofluorescence staining were performed on breast cancer tissues and cell lines.
- Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis was utilized.
- Correlation and survival analyses were conducted using public databases.
Main Results:
- MAT1 expression positively correlated with estrogen and progesterone receptor status.
- MAT1 was enriched in luminal and HER2-enriched breast cancer subtypes compared to basal-like subtype.
- MAT1 mRNA levels associated with epithelial, mesenchymal, cancer stem cell, apoptosis, and transcription markers, as well as oncogenes.
- MAT1 overexpression enhanced levels of EGFR, vimentin, SOX2, and SIX1.
- MAT1 served as a prognostic biomarker for worse relapse-free and metastasis-free survival.
Conclusions:
- MAT1 expression is significantly correlated with distinct molecular subtypes of breast cancer.
- MAT1 is associated with unfavorable prognosis and poorer survival outcomes in breast cancer patients.
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