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Published on: May 9, 2015
Linking resource selection and step selection models for habitat preferences in animals.
Théo Michelot1, Paul G Blackwell1, Jason Matthiopoulos2
1School of Mathematics and Statistics, University of Sheffield, Hicks Building, Hounsfield Road, Sheffield, S37RH, UK.
Animal movement models often conflict. This study introduces Markov chain Monte Carlo (MCMC) algorithms to reconcile individual-based step selection functions with population-based resource selection functions (RSFs) for accurate habitat association analysis.
Area of Science:
- Ecology
- Movement Ecology
- Computational Biology
Background:
- Discrepancies exist between individual-based (step selection functions) and population-based (resource selection functions [RSFs]) models of animal species-habitat associations.
- This incompatibility hinders a unified understanding of habitat use patterns.
Purpose of the Study:
- To resolve the fundamental incompatibility between individual and population viewpoints in animal movement analysis.
- To introduce a novel application of Markov chain Monte Carlo (MCMC) algorithms to animal movement studies.
Main Methods:
- Proposed an analogy between animal movement and MCMC sampler movement to ensure convergence of step selection rules to population utilization distribution parameters.
- Introduced a rejection-free MCMC algorithm, the local Gibbs sampler, mimicking realistic animal movement.
- Accommodated a wide range of biological assumptions within the MCMC framework.
Main Results:
- Demonstrated theoretically and empirically that locations simulated using the local Gibbs sampler yield correct RSFs.
- Showed that the proposed MCMC approach guarantees convergence to the target utilization distribution.
- Successfully estimated resource selection and movement parameters using simulated data.
Conclusions:
- The local Gibbs sampler provides a unified framework for analyzing animal species-habitat associations.
- This MCMC-based approach reconciles conflicting results from individual and population-level models.
- Offers a flexible method for estimating movement and resource selection parameters under diverse biological assumptions.
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