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Related Concept Videos

Peptide Bonds02:43

Peptide Bonds

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A peptide bond covalently attaches amino acids through a dehydration reaction. One amino acid's carboxyl group and another amino acid's amino group combine, releasing a water molecule. The resulting bond is the peptide bond. The products that such linkages form are peptides. As more amino acids join this growing chain, the resulting chain is a polypeptide. Each polypeptide has a free amino group at one end. This end has the N-terminal, or the amino-terminal, and the other end has a free...
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The first human genome sequencing project cost $2.7 billion and was declared complete in 2003, after 15 years of international cooperation and collaboration between several research teams and funding agencies. Today, with the advent of next-generation sequencing technologies, the cost and time of sequencing a human genome have dropped over 100 fold.
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Hydrogen Bonds00:26

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Hydrogen bonds are weak attractions between atoms that have formed other chemical bonds. One of these atoms is electronegative, like oxygen, and has a partial negative charge. The other is a hydrogen atom that has bonded with another electronegative atom and has a partial positive charge.
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Hydrogen Bonds01:04

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A hydrogen bond is formed when a weakly positive hydrogen atom already bonded to one electronegative atom (for example, the oxygen in the water molecule) is attracted to another electronegative atom from another polar molecule, such as water (H2O), hydrogen fluoride (HF), or ammonia (NH3). The huge electronegativity difference between the H atom (2.1) and the atom to which it is bonded (4.0 for an F atom, 3.5 for an O atom, or 3.0 for an N atom), combined with the very small size of an H atom...
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Cis-regulatory Sequences02:02

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Cis-regulatory sequences are short fragments of non-coding DNA that are present on the same chromosomes as the genes that they regulate. These fragments serve as binding sites for transcriptional regulators, proteins that are responsible for controlling gene transcription and differential gene expression across cell types in eukaryotes. Cis-regulatory sequences can be close to the gene of interest or thousands of bases away in the DNA sequence; however, those sequences that are further away are...
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Stereoisomerism of Cyclic Compounds02:33

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In this lesson, we delve into the role of ring conformation and its stability, which determines the spatial arrangement and, consequently, the molecular symmetry and stereoisomerism of cyclic compounds. 1,2-Dimethylcyclohexane is used as a case study to evaluate the possible number of stereoisomers. Here, given the multiple (n = 2) chiral centers, there are 2n = 4 possible configurations that lack a plane of symmetry, as the ring skeleton exists in a non-planar chair conformation. In addition,...
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Constructing Cyclic Peptides Using an On-Tether Sulfonium Center
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Hydrogenation catalyst generates cyclic peptide stereocentres in sequence.

Diane N Le1, Eric Hansen2, Hasan A Khan1,3

  • 1Department of Chemistry, University of California, Irvine, CA, USA.

Nature Chemistry
|August 1, 2018
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Summary
This summary is machine-generated.

A synthetic rhodium catalyst enables stereoselective cyclic peptide synthesis by selectively binding dehydroamino acids. This molecular recognition controls cascade hydrogenation directionality, offering a new approach for organic synthesis.

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Area of Science:

  • Organic Chemistry
  • Catalysis
  • Medicinal Chemistry

Background:

  • Molecular recognition is crucial in biological systems, influencing enzyme specificity, gene regulation, and disease treatment.
  • Harnessing molecular recognition principles can advance synthetic organic chemistry and drug discovery.

Purpose of the Study:

  • To develop a synthetic catalyst that mimics enzymatic molecular recognition for organic synthesis.
  • To achieve selective and stereoselective synthesis of cyclic peptides using a rhodium-based catalyst.

Main Methods:

  • Utilized a synthetic rhodium-based catalyst for selective binding of dehydroamino acid residues.
  • Conducted combined experimental and theoretical studies to elucidate reaction mechanisms.
  • Investigated catalyst-substrate interactions to understand stereocontrol in cascade reduction.

Main Results:

  • Demonstrated selective binding of a dehydroamino acid residue by the rhodium catalyst.
  • Achieved sequential and stereoselective synthesis of cyclic peptides.
  • Revealed that catalyst dissociation, not processivity, dictates C to N directionality in cascade hydrogenation.

Conclusions:

  • Catalyst-substrate recognition, rather than a processive mechanism, governs the stereochemical outcome of cyclic peptide synthesis.
  • The mechanistic insights provide a foundation for developing novel cascade hydrogenation strategies.
  • This approach offers a powerful tool for the synthesis of complex cyclic peptides with high stereocontrol.