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Updated: Feb 7, 2026

Modeling Spontaneous Metastatic Renal Cell Carcinoma mRCC in Mice Following Nephrectomy
Published on: April 29, 2014
CLEC3B is downregulated and inhibits proliferation in clear cell renal cell carcinoma
1Medical Research Center, Beijing Chao‑Yang Hospital, Capital Medical University, Beijing 100020, P.R. China.
Abstract:
Dysregulation of C‑Type Lectin Domain Family 3 Member B (CLEC3B) in serum or tumor tissues has been reported in patients with various cancer types. However, the expression and function of CLEC3B in clear cell renal cell carcinoma (ccRCC) remain unknown. To examine the function of CLEC3B in ccRCC, The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases were examined to determine the expression of CLEC3B at the transcriptional level and it was demonstrated that CLEC3B mRNA was significantly downregulated in ccRCC compared with normal tissues (P<0.0001 and P=0.0392 in TCGA and GEO databases, respectively). The downregulation of CLEC3B was further validated at the protein level in 78.9% of ccRCCs by immunohistochemistry. To investigate the potential genetic mechanism for CLEC3B downregulation in ccRCC, copy number analysis was performed by profiling the copy number variation data from the TCGA project and it was revealed that the copy number loss of CLEC3B was prevalent in up to 88.1% of patients with ccRCC. CLEC3B genetic deletion was coupled with the well‑known genetic loss of the von Hippel‑Lindau tumor suppressor, which is a characteristic oncogenic event during ccRCC carcinogenesis. The downregulation of CLEC3B was associated with tumor progression and predicted unfavorable prognostic outcomes in the TCGA cohort. Real‑time cell analyzer system technology revealed that CLEC3B inhibited the proliferation of ccRCC cell lines in vitro and that the mitogen‑activated protein kinase pathway may contribute to this process. CLEC3B demonstrated substantial positive associations with proliferation inhibitors, but inverse associations with proliferation inducers and markers in two large ccRCC cohorts, suggesting that CLEC3B was able to identify ccRCCs with a lower proliferation capacity. In conclusion, the results of the present study propose that CLEC3B is a promising target for therapeutic intervention in ccRCC.
Insights
C-Type Lectin Domain Family 3 Member B (CLEC3B) is downregulated in clear cell renal cell carcinoma (ccRCC), correlating with tumor progression. Restoring CLEC3B may offer a therapeutic strategy for ccRCC patients.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- C-Type Lectin Domain Family 3 Member B (CLEC3B) dysregulation is noted in various cancers.
- The role of CLEC3B in clear cell renal cell carcinoma (ccRCC) is currently unknown.
Purpose of the Study:
- To investigate the expression and function of CLEC3B in ccRCC.
- To determine if CLEC3B downregulation is linked to ccRCC development and prognosis.
Main Methods:
- Analysis of CLEC3B mRNA expression in The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases.
- Immunohistochemistry to validate CLEC3B protein levels.
- Copy number variation analysis to identify genetic mechanisms of downregulation.
- In vitro studies using real-time cell analyzer system technology to assess CLEC3B's effect on ccRCC cell proliferation.
Main Results:
- CLEC3B mRNA was significantly downregulated in ccRCC tissues compared to normal tissues.
- CLEC3B protein was downregulated in 78.9% of ccRCC cases.
- Copy number loss of CLEC3B was prevalent (88.1%) and associated with von Hippel-Lindau gene loss.
- CLEC3B downregulation correlated with tumor progression and predicted unfavorable outcomes.
- CLEC3B inhibited ccRCC cell proliferation in vitro, potentially via the MAPK pathway.
- CLEC3B expression identified ccRCCs with lower proliferation capacity.
Conclusions:
- CLEC3B is significantly downregulated in ccRCC due to genetic deletion.
- CLEC3B downregulation is associated with tumor progression and poor prognosis.
- CLEC3B exhibits tumor-suppressive functions in ccRCC and may serve as a therapeutic target.
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