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Covalently Linked Protein Regulators02:04

Covalently Linked Protein Regulators

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Proteins can undergo many types of post-translational modifications, often in response to changes in their environment. These modifications play an important role in the function and stability of these proteins. Covalently linked molecules include functional groups, such as methyl, acetyl, and phosphate groups, and also small proteins, such as ubiquitin. There are around 200 different types of covalent regulators that have been identified.
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Microtubule function and architecture are regulated by an array of specialized proteins called microtubule-associated proteins or MAPs. These proteins are widespread across different organisms and have conserved protein motifs, like the multi-TOG domain for tubulin binding found in the CLASP family of MAPs. Some MAPs are lineage-specific based on their conserved domains. Their functions depend upon the cytoskeletal architecture and cell type they are located within. In-plant cells, a specific...
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Related Experiment Video

Updated: Feb 7, 2026

AFM-based Mapping of the Elastic Properties of Cell Walls: at Tissue, Cellular, and Subcellular Resolutions
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AFM-based Mapping of the Elastic Properties of Cell Walls: at Tissue, Cellular, and Subcellular Resolutions

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Multiplexed protein maps link subcellular organization to cellular states.

Gabriele Gut1,2, Markus D Herrmann3,4, Lucas Pelkmans1

  • 1Institute of Molecular Life Sciences, University of Zurich, Zurich, Switzerland. gabriele.gut@uzh.ch lucas.pelkmans@imls.uzh.ch.

Science (New York, N.Y.)
|August 4, 2018
PubMed
Summary

This study introduces 40-plex protein mapping using iterative indirect immunofluorescence imaging (4i) to analyze biological samples. This high-throughput method reveals subcellular protein details for identifying single-cell states.

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Area of Science:

  • Biomedical research
  • Proteomics
  • Cell biology

Background:

  • Multiplexed protein measurements are crucial for understanding complex biological systems.
  • Current methods often lack the resolution or throughput to capture multi-scale biological information.

Purpose of the Study:

  • To develop and validate a high-throughput imaging technique for highly multiplexed protein measurements across multiple length scales.
  • To enable comprehensive quantification of protein subcompartmentalization in situ.

Main Methods:

  • Iterative indirect immunofluorescence imaging (4i) was employed to achieve 40-plex protein readouts.
  • High-throughput analysis from millimeter to nanometer scales was performed on biological samples.
  • Computer vision and systems biology approaches were utilized for unsupervised quantification.

Main Results:

  • Simultaneous capture of population, cellular, and subcellular properties, including microenvironment, cell shape, and cell cycle.
  • Detailed morphology of organelles, cytoskeletal structures, and nuclear subcompartments were analyzed.
  • In situ analysis of signaling receptor fate in thousands of single cells was achieved.

Conclusions:

  • Highly multiplexed subcellular protein maps provide unprecedented insights into biological systems.
  • This approach facilitates the identification of functionally relevant single-cell states.
  • The 4i technique offers a powerful tool for high-throughput, multi-scale proteomic analysis in biomedicine.