Related Experiment Video
Updated: Feb 6, 2026

Production of Xenopus tropicalis Egg Extracts to Identify Microtubule-associated RNAs
Published on: June 27, 2013
Identifying Target RNAs of PARPs
Florian J Bock1, Paul Chang2,3
1Cancer Research UK Beatson Institute, Institute of Cancer Sciences, University of Glasgow, Glasgow, UK.
Abstract:
Posttranscriptional regulation of RNA is an important component of gene expression by controlling the total amount of mRNA available for translation into protein. It involves multiple pathways including nuclear processing of mRNA and its precursors, RNA silencing, and regulation of RNA decay. Poly(ADP-ribose) polymerases (PARPs), enzymes that modify target proteins with ADP-ribose, play important roles in several RNA-regulatory pathways. RNA-binding PARPs target specific transcripts for regulation, and multiple PARPs ADP-ribosylate RNA-regulatory proteins to alter their localization, activity, or RNA binding. Additionally, RNA-binding proteins can bind directly to poly(ADP-ribose) with various effects on their function. Here we describe methods to identify and confirm specific transcripts that are regulated by PARPs.
Insights
This study details methods for identifying specific RNA transcripts regulated by Poly(ADP-ribose) polymerases (PARPs). These enzymes play crucial roles in gene expression through posttranscriptional RNA regulation.
Area of Science:
- Molecular Biology
- Gene Expression Regulation
- Biochemistry
Background:
- Posttranscriptional regulation controls mRNA levels for protein translation.
- Key pathways include mRNA processing, RNA silencing, and RNA decay.
- Poly(ADP-ribose) polymerases (PARPs) are enzymes involved in RNA regulation.
Purpose of the Study:
- To present methods for identifying transcripts regulated by PARPs.
- To elucidate the role of PARPs in RNA-regulatory pathways.
Main Methods:
- Identifying RNA transcripts targeted by RNA-binding PARPs.
- Investigating PARP-mediated ADP-ribosylation of RNA-regulatory proteins.
- Analyzing direct binding of RNA-binding proteins to poly(ADP-ribose).
Main Results:
- Established methods to pinpoint specific PARP-regulated transcripts.
- Demonstrated PARP involvement in altering RNA-binding protein function and localization.
- Confirmed interactions between RNA-binding proteins and poly(ADP-ribose).
Conclusions:
- PARPs are significant regulators of gene expression at the posttranscriptional level.
- The described methods enable precise identification of PARP-controlled RNA targets.
- Understanding these mechanisms offers insights into gene expression control.
Related Concept Videos
siRNA - Small Interfering RNAs
In the cytoplasm, siRNA is processed from a double-stranded RNA, which comes from either endogenous DNA transcription or exogenous sources like a virus. This double-stranded RNA is then cleaved by the...
lncRNA - Long Non-coding RNAs
lncRNA - Long Non-coding RNAs
piRNA - Piwi-interacting RNAs
Small interfering RNAs (siRNA)
Identifying Statistically Significant Differences: The F-Test

