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Updated: Feb 6, 2026

Assessing Specificity of Anticancer Drugs In Vitro
Published on: March 23, 2016
Following anticancer drug activity in cell lysates with DNA devices
Dimithree Kahanda1, Naveen Singh2, David A Boothman2
1Department of Physics, The University of Texas at Dallas, 800 W. Campbell Rd., PHY 36, Richardson, TX 75080, USA.
Abstract:
There is a great need to track the selectivity of anticancer drug activity and to understand the mechanisms of associated biological activity. Here we focus our studies on the specific NQO1 bioactivatable drug, ß-lapachone, which is in several Phase I clinical trials to treat human non-small cell lung, pancreatic and breast cancers. Multi-electrode chips with electrochemically-active DNA monolayers are used to track anticancer drug activity in cellular lysates and correlate cell death activity with DNA damage. Cells were prepared from the triple-negative breast cancer (TNBC) cell line, MDA-MB-231 (231) to be proficient or deficient in expression of the NAD(P)H:quinone oxidoreductase 1 (NQO1) enzyme, which is overexpressed in most solid cancers and lacking in control healthy cells. Cells were lysed and added to chips, and the impact of β-lapachone (β-lap), an NQO1-dependent DNA-damaging drug, was tracked with DNA electrochemical signal changes arising from drug-induced DNA damage. Electrochemical DNA devices showed a 3.7-fold difference in the electrochemical responses in NQO1+ over NQO1- cell lysates, as well as 10-20-fold selectivity to catalase and dicoumarol controls that deactivate DNA damaging pathways. Concentration-dependence studies revealed that 1.4 µM β-lap correlated with the onset of cell death from viability assays and the midpoint of DNA damage on the chip, and 2.5 µM β-lap correlated with the midpoint of cell death and the saturation of DNA damage on the chip. Results indicate that these devices could inform therapeutic decisions for cancer treatment.
Insights
Researchers developed electrochemical DNA devices to track anticancer drug activity. These tools show promise in monitoring drug selectivity and guiding cancer treatment decisions by detecting DNA damage in cancer cells.
Area of Science:
- Biomedical Engineering
- Cancer Research
- Electrochemistry
Background:
- Understanding anticancer drug selectivity and mechanisms is crucial for effective cancer therapy.
- NAD(P)H:quinone oxidoreductase 1 (NQO1) is an enzyme overexpressed in many cancers, making it a target for bioactivatable drugs.
- Triple-negative breast cancer (TNBC) cell lines offer a model to study NQO1-dependent drug activity.
Purpose of the Study:
- To develop and validate electrochemical DNA devices for tracking the activity and selectivity of the NQO1-bioactivatable drug, β-lapachone.
- To correlate drug-induced DNA damage with cell death in cancer cells with varying NQO1 expression levels.
- To assess the potential of these devices in informing therapeutic decisions for cancer treatment.
Main Methods:
- Utilized multi-electrode chips with electrochemically-active DNA monolayers.
- Prepared cancer cell lysates from MDA-MB-231 (TNBC) cell lines, differing in NQO1 enzyme expression (NQO1+ and NQO1-).
- Tracked electrochemical DNA signal changes in response to β-lapachone exposure to quantify drug-induced DNA damage.
Main Results:
- Electrochemical DNA devices demonstrated a 3.7-fold difference in response between NQO1+ and NQO1- cell lysates.
- The devices showed 10-20 fold selectivity compared to control agents (catalase, dicoumarol) that inhibit DNA damaging pathways.
- Concentration-dependent studies established correlations between β-lapachone concentrations, cell death onset, and DNA damage levels.
Conclusions:
- Electrochemical DNA devices can effectively monitor the activity and selectivity of NQO1-dependent anticancer drugs like β-lapachone.
- These devices show potential for real-time assessment of drug-induced DNA damage and correlation with cell viability.
- The findings suggest that electrochemical DNA biosensors could aid in optimizing cancer therapeutic strategies.
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