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Transcriptome Profiling of In-Vivo Produced Bovine Pre-implantation Embryos Using Two-color Microarray Platform
Published on: January 30, 2017
Microarray analysis of miRNAs during hindgut development in rat embryos with ethylenethiourea‑induced anorectal
Cai-Yun Long1, Xiao-Bing Tang1, Wei-Lin Wang1
1Department of Pediatric Surgery, Shengjing Hospital, China Medical University, Shenyang, Liaoning 110004, P.R. China.
Abstract:
Anorectal malformations (ARMs) are one of the most common congenital malformations of the digestive tract; however, the pathogenesis of this disease remains to be fully elucidated. MicroRNAs (miRNAs) are important in gastrointestinal development and may be involved in the pathogenesis of ARMs. The present study aimed to profile miRNAs and examine their potential functions in rats with ethylenethiourea (ETU)‑induced ARMs. Pregnant Wistar rats (n=36) were divided randomly into ETU‑treated and control groups. The rats in the ETU‑treated group were gavage‑fed 1% ETU (125 mg/kg) on gestational day 10 (GD10), whereas the control group rats received a corresponding dose of saline. Embryos were harvested by cesarean section on GD14, GD15 and GD16. Hindgut tissue was isolated from the fetuses for RNA extraction and microarray analysis, followed by bioinformatics analysis and reverse transcription‑quantitative polymerase chain reaction (RT‑qPCR) validation. Overall, 38 miRNAs were differentially expressed (all upregulated) on GD14, 49 (32 upregulated and 17 downregulated) on GD15, and 42 (all upregulated) on GD16 in the ARM group compared with the normal group. The top 18 miRNAs with |log2(fold change)| >4.25 were selected for further bioinformatics analysis. Among these miRNAs, five were differentially expressed at two time-points and were involved in ARM‑associated signaling pathways. The RT‑qPCR analysis revealed that three miRNA (miR), miR‑125b‑2‑3p, miR‑92a‑2‑5p and miR‑99a‑5p, were significantly differentially expressed in rats with ARMs compared with the normal group. In conclusion, the results suggested that the differential expression of miR‑125b‑2‑3p, miR‑92a‑2‑5p and miR‑99a‑5p during key time-points of anorectal formation in rats may have functions in the pathogenesis of ARM.
Insights
This study investigated microRNAs (miRNAs) in rats with anorectal malformations (ARMs). Key miRNAs, including miR-125b-2-3p, miR-92a-2-5p, and miR-99a-5p, were found to be differentially expressed, suggesting their role in ARM pathogenesis.
Area of Science:
- Developmental Biology
- Molecular Biology
- Genetics
Background:
- Anorectal malformations (ARMs) are common congenital digestive tract defects with unclear pathogenesis.
- MicroRNAs (miRNAs) play crucial roles in gastrointestinal development and are implicated in ARM development.
Purpose of the Study:
- To profile miRNAs and investigate their potential functions in ethylenethiourea (ETU)-induced ARMs in a rat model.
- To identify specific miRNAs involved in the key developmental stages of anorectal formation.
Main Methods:
- Pregnant Wistar rats were exposed to ETU on gestational day 10 to induce ARMs.
- Hindgut tissues from rat embryos were analyzed using microarray and RT-qPCR at gestational days 14, 15, and 16.
- Bioinformatics analysis was performed on differentially expressed miRNAs.
Main Results:
- 38, 49, and 42 miRNAs were differentially expressed on gestational days 14, 15, and 16, respectively, in the ARM group compared to controls.
- Five differentially expressed miRNAs were identified to be involved in ARM-associated signaling pathways.
- miR-125b-2-3p, miR-92a-2-5p, and miR-99a-5p showed significant differential expression in rats with ARMs.
Conclusions:
- The study identified specific miRNAs, including miR-125b-2-3p, miR-92a-2-5p, and miR-99a-5p, that are differentially expressed during critical periods of anorectal formation in rats.
- These findings suggest that these miRNAs may play a significant role in the pathogenesis of anorectal malformations.
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