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Updated: Feb 6, 2026

Induction and Validation of Cellular Senescence in Primary Human Cells
Published on: June 20, 2018
The induction of the fibroblast extracellular senescence metabolome is a dynamic process
Emma N L James1, Mark H Bennett2, E Kenneth Parkinson3
1Centre for Immunobiology and Regenerative Medicine, Institute of Dentistry, Barts and the London School of Medicine and Dentistry, Queen Mary University of London, Turner Street, London, E1 2AD, UK.
Abstract:
Cellular senescence is often associated with irreparable DNA double strand breaks (IrrDSBs) which accumulate with chronological age (IrrDSBsen). The removal of senescent cells ameliorates several age-related diseases in mice but the translation of these findings into a clinical setting would be aided by the characterisation of non-invasive biomarkers of senescent cells. Several serum metabolites are independent indicators of chronological age and some of these accumulate outside senescent fibroblasts independently of cell cycle arrest, repairable DNA breaks and cell size (the extracellular senescence metabolome, or ESM). The post-mitotic phase of senescence is dynamic, making the detection of senescent cells in vivo difficult. An unbiased metabolomic screen of the IrrDSBsen fibroblast ESM also showed differences in the times of initiation and maintenance of different metabolites but generally the ESM altered progressively over the 20 day study period unlike the reported transcriptional profiles. This more detailed analysis of IrrDSBsen identified several new ESM metabolites that are associated with chronological ageing. Targeted analysis of citrate confirmed the dynamic nature of this metabolite in two cell lines and revealed its independence from the senescence effector p16INK4A. These data will aid our understanding of metabolic signatures of ageing and their relationship to cellular senescence and IrrDSBs.
Insights
Cellular senescence, linked to DNA damage, can be identified by specific extracellular metabolites. These metabolic signatures offer new non-invasive biomarkers for aging and senescence.
Area of Science:
- Gerontology
- Cell Biology
- Metabolomics
Background:
- Cellular senescence, characterized by irreparable DNA double-strand breaks (IrrDSBs), is a hallmark of aging.
- Senescent cell removal improves age-related diseases, but non-invasive biomarkers are needed for clinical translation.
- Extracellular senescence metabolome (ESM) comprises serum metabolites indicating chronological age and accumulating independently of cell cycle arrest.
Purpose of the Study:
- To characterize non-invasive biomarkers for senescent cells.
- To investigate the dynamic changes in the extracellular senescence metabolome (ESM) associated with aging and senescence.
- To identify novel ESM metabolites linked to chronological aging and cellular senescence.
Main Methods:
- Unbiased metabolomic screening of ESM from fibroblasts with irreparable DNA double-strand breaks (IrrDSBsen).
- Analysis of metabolite initiation and maintenance over a 20-day study period.
- Targeted analysis of citrate in two cell lines to assess its dynamic nature and relationship with p16INK4A.
Main Results:
- The ESM of IrrDSBsen fibroblasts showed progressive alterations over 20 days, unlike transcriptional profiles.
- Several new ESM metabolites associated with chronological aging were identified.
- Citrate levels dynamically changed in senescent cells, independent of the senescence effector p16INK4A.
Conclusions:
- The extracellular senescence metabolome (ESM) provides dynamic metabolic signatures of aging and cellular senescence.
- Identified ESM metabolites can serve as potential non-invasive biomarkers for aging and senescence.
- Understanding these metabolic signatures aids in the study of aging, senescence, and DNA damage.
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