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Measuring Microbial Mutation Rates with the Fluctuation Assay
Published on: November 28, 2019
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A Post-pleistocene Calibrated Mutation Rate from Insect Museum Specimens.
Gideon Ney1, Katy Frederick1, Johannes Schul1
1Department of Biological Sciences, University of Missouri, Columbia, Missouri, United States.
Plos Currents
|August 18, 2018
Summary
Researchers calibrated a new mutation rate for the katydid species *Neoconocephalus lyristes* using the Mohawk-Hudson Divide. This provides a high intraspecific mutation rate for recent species divergence events.
Area of Science:
- Evolutionary Biology
- Molecular Evolution
- Genetics
Background:
- Accurately dating recent species divergence is difficult without molecular calibration points.
- The katydid species *Neoconocephalus lyristes* offers a unique opportunity to calibrate a mutation rate.
- A known biogeographic event, the Mohawk-Hudson Divide, serves as a calibration point.
Purpose of the Study:
- To calibrate a post-Pleistocene, taxa-specific mutation rate for *Neoconocephalus lyristes*.
- To investigate molecular clock models for recent divergence events.
- To compare estimated mutation rates with those of other insect mitochondrial DNA.
Main Methods:
- DNA extraction from museum specimens of *N. lyristes* (Midwest and Atlantic populations).
- Sequencing of the mitochondrial gene COI using custom primers.
- Coalescent analyses employing strict and relaxed molecular clock models in BEAST v1.8.2.
Main Results:
- The strict molecular clock model was not rejected in favor of the relaxed clock model.
- An intraspecific mutation rate of 14.4-17.3 %/myr was calculated using the strict clock model.
- This calculated rate is substantially higher than typical insect mitochondrial DNA mutation rates but aligns with rates from other taxa with recent divergences.
Conclusions:
- The study successfully calibrated a high mutation rate for *N. lyristes* linked to a specific biogeographic event.
- The findings highlight the utility of museum specimens and biogeographic events for molecular clock calibration.
- The derived mutation rate is valuable for dating recent evolutionary events in closely related species.
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