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Detection and Monitoring of Tumor Associated Circulating DNA in Patient Biofluids
Published on: June 8, 2019
A method for treatment monitoring using circulating tumour DNA in cancer patients without targetable mutations
Christina Demuth1, Anne Winther-Larsen1, Anne Tranberg Madsen1
1Department of Clinical Biochemistry, Aarhus University Hospital, Aarhus, Denmark.
Background:
The potentials of circulating tumour DNA (ctDNA) have been studied for non-invasive disease monitoring in patients with targetable mutations. However, the majority of cancer patients harbour no targetable mutations. A workflow including targeted next-generation sequencing (NGS) and droplet digital PCR (ddPCR) could be used for monitoring treatment in these patients. Thus, our aim was to evaluate the workflow for ctDNA monitoring in a cohort of non-small cell lung cancer patients.
Methods:
Forty patients were prospectively included. Plasma samples were collected prior to and during treatment. NGS (Ion AmpliSeq Colon and Lung Cancer panel v2) was performed on ctDNA from pre-treatment samples. The identified mutations were monitored by ddPCR in consecutively collected samples.
Results:
Mutations were detected in 21 patients. The most commonly mutated genes were TP53 (N=20) and KRAS (N=13). Treatment was discontinued due to non-response in 18 patients. In 16 of these, a simultaneous increase in ctDNA concentration was observed. A twofold ctDNA concentration increase confirmed in a second successive sample predicted non-response on the following imaging in 83% of patients (10/12).
Conclusion:
ctDNA monitoring can be used for early detection of non-response in patients without targetable mutations, and therefore could supplement imaging data for treatment monitoring in this subset of patients.
Insights
Circulating tumor DNA (ctDNA) monitoring using next-generation sequencing and ddPCR can detect non-response early in non-small cell lung cancer patients lacking targetable mutations, supplementing imaging. This aids treatment decisions for a wider patient group.
Area of Science:
- Oncology
- Molecular Diagnostics
- Genomics
Background:
- Circulating tumor DNA (ctDNA) shows potential for non-invasive disease monitoring in cancer patients with targetable mutations.
- However, most cancer patients lack targetable mutations, limiting current ctDNA applications.
- A combined workflow of targeted next-generation sequencing (NGS) and droplet digital PCR (ddPCR) may enable treatment monitoring for these patients.
Purpose of the Study:
- To evaluate a ctDNA monitoring workflow using NGS and ddPCR for non-small cell lung cancer (NSCLC) patients without targetable mutations.
- To assess the utility of this workflow in predicting treatment response or non-response.
Main Methods:
- Prospective study of 40 NSCLC patients.
- Plasma samples collected pre-treatment and during therapy.
- Targeted NGS on pre-treatment ctDNA to identify mutations, followed by ddPCR for monitoring in serial samples.
Main Results:
- Mutations were detected in 21 patients, with TP53 and KRAS being the most common.
- An increase in ctDNA concentration was observed in 16 of 18 patients with discontinued treatment due to non-response.
- A twofold ctDNA increase in a second sample predicted non-response on subsequent imaging in 83% of patients.
Conclusions:
- ctDNA monitoring is effective for early detection of non-response in NSCLC patients without targetable mutations.
- This approach can supplement imaging data for treatment monitoring in this patient subset.
- Enables personalized treatment adjustments based on molecular response.
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