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Updated: Feb 6, 2026

Quantification of Efferocytosis by Single-cell Fluorescence Microscopy
Published on: August 18, 2018
Single-Fluorescent Protein Reporters Allow Parallel Quantification of Natural Killer Cell-Mediated Granzyme and
Clarissa Liesche1, Patricia Sauer1, Isabel Prager2
1Division of Theoretical Bioinformatics at German Cancer Research Center (DKFZ), Department for Bioinformatics and Functional Genomics, Institute for Pharmacy and Molecular Biotechnology, BioQuant Center, Heidelberg University, Heidelberg, Germany.
Abstract:
Natural killer (NK) cells eliminate infected and tumorigenic cells through delivery of granzymes via perforin pores or by activation of caspases via death receptors. In order to understand how NK cells combine different cell death mechanisms, it is important to quantify target cell responses on a single cell level. However, currently existing reporters do not allow the measurement of several protease activities inside the same cell. Here, we present a strategy for the comparison of two different proteases at a time inside individual target cells upon engagement by NK cells. We developed single-fluorescent protein reporters containing the RIEAD or the VGPD cleavage site for the measurement of granzyme B activity. We show that these two granzyme B reporters can be applied in combination with caspase-8 or caspase-3 reporters. While we did not find that caspase-8 was activated by granzyme B, our method revealed that caspase-3 activity follows granzyme B activity with a delay of about 6 min. Finally, we illustrate the comparison of several different reporters for granzyme A, M, K, and H. The approach presented here is a valuable means for the investigation of the temporal evolution of cell death mediated by cytotoxic lymphocytes.
Insights
This study introduces novel reporters to simultaneously measure protease activity in single cells, revealing caspase-3 activation follows granzyme B activity in cytotoxic lymphocyte responses.
Area of Science:
- Immunology
- Cell Biology
- Biochemistry
Background:
- Natural killer (NK) cells induce target cell death via granzymes or death receptors.
- Quantifying single-cell responses is crucial for understanding NK cell cytotoxic mechanisms.
- Existing reporters limit the simultaneous measurement of multiple protease activities.
Purpose of the Study:
- To develop a novel strategy for comparing two protease activities within individual target cells.
- To enable the simultaneous measurement of granzyme and caspase activities.
- To investigate the temporal relationship between granzyme B and caspase activation.
Main Methods:
- Development of single-fluorescent protein reporters with specific cleavage sites (RIEAD, VGPD) for granzyme B.
- Application of reporters in combination with caspase-8 and caspase-3 reporters.
- Simultaneous measurement of protease activities in single target cells upon NK cell engagement.
Main Results:
- Demonstrated the ability to compare two different protease activities within individual target cells.
- Showed that caspase-3 activity follows granzyme B activity with a delay of approximately 6 minutes.
- Did not find evidence of granzyme B activating caspase-8.
Conclusions:
- The developed reporter system allows for the simultaneous measurement of multiple protease activities in single cells.
- Provides insights into the temporal dynamics of cell death pathways mediated by cytotoxic lymphocytes.
- Facilitates comparative analysis of various granzyme activities (A, M, K, H) in conjunction with caspases.
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