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Published on: October 16, 2018
Analysis of MDM2 Amplification: Next-Generation Sequencing of Patients With Diverse Malignancies
Shumei Kato1, Jeffrey S Ross2, Laurie Gay2
1University of California, San Diego, Moores Cancer Center, La Jolla.
Purpose:
MDM2 amplification can promote tumorigenesis directly or indirectly through p53 inhibition. MDM2 has increasing clinical relevance because inhibitors are under evaluation in clinical trials, and MDM2 amplification is a possible genomic correlate of accelerated progression, known as hyperprogression, after anti-PD-1/PD-L1 immunotherapy. We used next-generation sequencing (NGS) to ascertain MDM2 amplification status across a large number of diverse cancers.
Methods:
We interrogated the molecular profiles of 102,878 patients with diverse malignancies for MDM2 amplification and co-altered genes using clinical-grade NGS (182 to 465 genes).
Results:
MDM2 amplification occurred in 3.5% of patients (3,650 of 102,878). The majority of tumor types had a small subset of patients with MDM2 amplification. Most of these patients (99.0% [3,613/3,650]) had co-alterations that accompanied MDM2 amplification. Various pathways, including those related to tyrosine kinase (37.9% [1,385 of 3,650]), PI3K signaling (25.4% [926 of 3,650]), TP53 (24.9% [910 of 3,650]), and MAPK signaling (23.6% [863 of 3,650]), were involved. Although infrequent, mismatch repair genes and PD-L1 amplification also were co-altered (2.2% [79 of 3,650]). Most patients (97.6% [3,563 of 3,650]) had one or more co-alterations potentially targetable with either a Food and Drug Administration-approved or investigational agent. MDM2 amplifications were less frequently associated with high tumor mutation burden compared with the MDM2 wild-type population (2.9% v 6.5%; P < .001). An illustrative patient who harbored MDM2 amplification and experienced hyperprogression with an immune checkpoint inhibitor is presented.
Conclusion:
MDM2 amplification was found in 3.5% of 102,878 patients, 97.6% of whom harbored genomic co-alterations that were potentially targetable. This study suggests that a small subset of most tumor types have MDM2 amplification as well as pharmacologically tractable co-alterations.
Insights
MDM2 amplification occurs in 3.5% of diverse cancers and is often accompanied by targetable co-alterations. This finding is crucial for understanding cancer progression and developing new therapies.
Area of Science:
- Oncology
- Genomics
- Molecular Biology
Background:
- MDM2 amplification promotes tumorigenesis via p53 inhibition.
- MDM2 inhibitors are in clinical trials, and MDM2 amplification correlates with hyperprogression after immunotherapy.
- Assessing MDM2 amplification is clinically relevant for diverse cancers.
Purpose of the Study:
- To determine the frequency of MDM2 amplification across a large cohort of diverse cancer types.
- To identify co-altered genes and pathways associated with MDM2 amplification.
- To evaluate the potential for targeted therapies in patients with MDM2 amplification.
Main Methods:
- Next-generation sequencing (NGS) was used to analyze the molecular profiles of 102,878 patients.
- MDM2 amplification status and co-alterations were interrogated in 182 to 465 genes.
- Analysis included diverse malignancies.
Main Results:
- MDM2 amplification was found in 3.5% of patients (3,650/102,878).
- 99.0% of these patients had co-alterations in pathways like tyrosine kinase, PI3K, TP53, and MAPK signaling.
- 97.6% of patients with MDM2 amplification had potentially targetable co-alterations, while MDM2 amplifications were less associated with high tumor mutation burden.
Conclusions:
- MDM2 amplification occurs in a small subset of most tumor types.
- The majority of patients with MDM2 amplification harbor potentially targetable genomic co-alterations.
- This highlights MDM2 amplification as a significant biomarker with therapeutic implications.
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