Analysis of MDM2 Amplification: Next-Generation Sequencing of Patients With Diverse Malignancies

Shumei Kato1, Jeffrey S Ross2, Laurie Gay2

  • 1University of California, San Diego, Moores Cancer Center, La Jolla.

JCO Precision Oncology
|August 28, 2018
PubMed
Abstract

Insights

MDM2 amplification occurs in 3.5% of diverse cancers and is often accompanied by targetable co-alterations. This finding is crucial for understanding cancer progression and developing new therapies.

Area of Science:

  • Oncology
  • Genomics
  • Molecular Biology

Background:

  • MDM2 amplification promotes tumorigenesis via p53 inhibition.
  • MDM2 inhibitors are in clinical trials, and MDM2 amplification correlates with hyperprogression after immunotherapy.
  • Assessing MDM2 amplification is clinically relevant for diverse cancers.

Purpose of the Study:

  • To determine the frequency of MDM2 amplification across a large cohort of diverse cancer types.
  • To identify co-altered genes and pathways associated with MDM2 amplification.
  • To evaluate the potential for targeted therapies in patients with MDM2 amplification.

Main Methods:

  • Next-generation sequencing (NGS) was used to analyze the molecular profiles of 102,878 patients.
  • MDM2 amplification status and co-alterations were interrogated in 182 to 465 genes.
  • Analysis included diverse malignancies.

Main Results:

  • MDM2 amplification was found in 3.5% of patients (3,650/102,878).
  • 99.0% of these patients had co-alterations in pathways like tyrosine kinase, PI3K, TP53, and MAPK signaling.
  • 97.6% of patients with MDM2 amplification had potentially targetable co-alterations, while MDM2 amplifications were less associated with high tumor mutation burden.

Conclusions:

  • MDM2 amplification occurs in a small subset of most tumor types.
  • The majority of patients with MDM2 amplification harbor potentially targetable genomic co-alterations.
  • This highlights MDM2 amplification as a significant biomarker with therapeutic implications.

Related Concept Videos

Next-generation Sequencing03:00

Next-generation Sequencing

The first human genome sequencing project cost $2.7 billion and was declared complete in 2003, after 15 years of international cooperation and collaboration between several research teams and funding agencies. Today, with the advent of next-generation sequencing technologies, the cost and time of sequencing a human genome have dropped over 100 fold.
Next-Generation Sequencing Methods
Although all next-generation methods use different technologies, they all share a set of standard features....
98.6K
Diversity of Archaea I01:30

Diversity of Archaea I

Archaea, a domain of single-celled microorganisms, are classified into five major phyla based on genetic and biochemical characteristics: Euryarchaeota, Crenarchaeota, Thaumarchaeota, Korarchaeota, and Nanoarchaeota. Among these, the phylum Euryarchaeota is notable for its remarkable diversity in morphology, metabolism, and ecological adaptations.Morphological and Metabolic DiversityMembers of Euryarchaeota exhibit a variety of cellular shapes, including rods and cocci. Their metabolic pathways...
660
Cell Diversity01:13

Cell Diversity

The concept of a cell started with microscopic observations of dead cork tissue by Robert Hooke in 1665. Hooke coined the term "cell" based on the resemblance of the small subdivisions in the cork to the rooms that monks inhabited, called cells. About ten years later, Antonie van Leeuwenhoek became the first person to observe the living and moving cells under a microscope. In the century that followed, the theory that cells represented the basic unit of life developed.
Multicellular...
5.1K
Diversity of Archaea II01:24

Diversity of Archaea II

Archaea, one of the three domains of life, exhibit remarkable diversity and adaptability, thriving in both extreme and moderate environments. Historically, most identified archaea have been classified into two major phyla: Euryarchaeota and Crenarchaeota. However, recent molecular studies have expanded this classification to include three additional phyla: Thaumarchaeota, Nanoarchaeota, and Korarchaeota, each exhibiting unique characteristics and ecological roles.Thaumarchaeota: Mesophiles...
529
Diversity of Protists I01:15

Diversity of Protists I

Excavata is a diverse group of protists that includes both chemoorganotrophic and phototrophic species, with some thriving in anaerobic environments. Among the key groups within Excavata are diplomonads and parabasalids, which are flagellated protists that lack mitochondria and chloroplasts. These microorganisms typically inhabit anoxic environments, such as the intestines of animals, where they exist either symbiotically or as parasites, relying on fermentation for energy production. Some...
1.2K
Diversity of Protists II01:27

Diversity of Protists II

Alveolates are a group of organisms recognized by the presence of alveoli, which are cytoplasmic sacs located beneath the cell membrane. While their function remains uncertain, alveoli may help regulate water balance by controlling how much water enters and leaves the cell. In dinoflagellates, these structures may serve as armor plates. There are three major types of alveolates: ciliates, which move using cilia; dinoflagellates, which use flagella for movement; and apicomplexans, which are...
1.1K