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Updated: Feb 6, 2026

Site-specific Bacterial Chromosome Engineering: ΦC31 Integrase Mediated Cassette Exchange (IMCE)
Published on: March 16, 2012
The integrase of the Macrococcus caseolyticus resistance island mecD (McRImecD ) inserts DNA site-specifically into
Sybille Schwendener1, Vincent Perreten1
1Institute of Veterinary Bacteriology, Vetsuisse Faculty, University of Bern, Bern, Switzerland.
Abstract:
The methicillin resistance gene mecD has been recently identified on chromosomal islands in Macrococcus caseolyticus (McRImecD ). The 5' end of McRImecD carries an integrase (int) of the tyrosine recombinase family and two genes (intR and xis) encoding putative DNA-binding proteins. The islands are integrated site-specifically at the 3' end of the rpsI gene, a highly conserved locus in Gram-positive bacteria. Moreover, the rpsI gene of some Staphylococcus and Bacillus strains was found to be followed by a related integrase, raising the question of whether McRImecD could be transferred to these species. We used circular model elements carrying 5' end fragments of McRImecD -1 to demonstrate that the int enzyme and the attachment (att) site were sufficient to mediate site-specific DNA integration into the rpsI locus of Staphylococcus aureus, Staphylococcus pseudintermedius and Bacillus thuringiensis in vivo. Including xis in the model element stimulated both integrative and excisive recombination reactions and influenced the Int enzyme in att site selection. The intR gene functions as a negative regulator of int and xis. The int-xis genes of McRImecD -1 encode a site-specific recombination function that enables the acquisition of McRImecD in new hosts and the potential dissemination of broad-spectrum β-lactam resistance across genus barriers.
Insights
The methicillin resistance gene mecD can transfer between bacterial species. This gene
Area of Science:
- Microbiology
- Genetics
- Molecular Biology
Background:
- The methicillin resistance gene mecD is found on chromosomal islands in Macrococcus caseolyticus (McRImecD).
- McRImecD contains an integrase (int) and regulatory genes (intR, xis), integrating at the rpsI gene locus in Gram-positive bacteria.
- Related integrases near the rpsI gene in other species suggest potential transfer of McRImecD.
Purpose of the Study:
- To investigate the site-specific recombination function of McRImecD.
- To determine if McRImecD can integrate into the rpsI locus of other bacterial species.
- To understand the roles of int, xis, and intR in McRImecD integration and regulation.
Main Methods:
- Used circular model elements with 5' fragments of McRImecD-1 for in vivo integration studies.
- Tested integration into the rpsI locus of Staphylococcus aureus, Staphylococcus pseudintermedius, and Bacillus thuringiensis.
- Analyzed the effects of int, xis, and intR on recombination and gene regulation.
Main Results:
- The integrase (int) and attachment (att) site of McRImecD were sufficient for site-specific integration into the rpsI locus of S. aureus, S. pseudintermedius, and B. thuringiensis.
- The xis gene enhanced both integration and excision, influencing att site selection by the Int enzyme.
- The intR gene acted as a negative regulator for int and xis gene expression.
Conclusions:
- The int-xis genes of McRImecD-1 provide a site-specific recombination system.
- This system facilitates the acquisition of McRImecD in new bacterial hosts.
- Potential for broad-spectrum β-lactam resistance dissemination across genus barriers is highlighted.
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