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Updated: Feb 6, 2026

Isolation and Functional Assessment of Human Breast Cancer Stem Cells from Cell and Tissue Samples
Published on: October 2, 2020
Function of HNRNPC in breast cancer cells by controlling the dsRNA-induced interferon response
Yusheng Wu1,2,3,4, Wenwei Zhao2,3,4, Yang Liu2,3,4,5
1Tsinghua-Peking Joint Center for Life Sciences, Beijing, China.
Abstract:
Elevated expression of RNA binding protein HNRNPC has been reported in cancer cells, while the essentialness and functions of HNRNPC in tumors were not clear. We showed that repression of HNRNPC in the breast cancer cells MCF7 and T47D inhibited cell proliferation and tumor growth. Our computational inference of the key pathways and extensive experimental investigations revealed that the cascade of interferon responses mediated by RIG-I was responsible for such tumor-inhibitory effect. Interestingly, repression of HNRNPC resulted in accumulation of endogenous double-stranded RNA (dsRNA), the binding ligand of RIG-I. These up-regulated dsRNA species were highly enriched by Alu sequences and mostly originated from pre-mRNA introns that harbor the known HNRNPC binding sites. Such source of dsRNA is different than the recently well-characterized endogenous retroviruses that encode dsRNA In summary, essentialness of HNRNPC in the breast cancer cells was attributed to its function in controlling the endogenous dsRNA and the down-stream interferon response. This is a novel extension from the previous understandings about HNRNPC in binding with introns and regulating RNA splicing.
Insights
Repressing the RNA-binding protein HNRNPC inhibits breast cancer growth by triggering an interferon response. This occurs due to accumulated double-stranded RNA (dsRNA) from introns, a novel finding for HNRNPC function.
Area of Science:
- Molecular Biology
- Cancer Research
- Immunology
Background:
- Elevated expression of the RNA-binding protein HNRNPC is observed in cancer cells.
- The precise role and essentiality of HNRNPC in tumor progression remain unclear.
Purpose of the Study:
- To investigate the function and essentiality of HNRNPC in breast cancer cells.
- To elucidate the molecular mechanisms underlying HNRNPC's role in tumor growth.
Main Methods:
- Computational inference of key pathways.
- Experimental investigations in MCF7 and T47D breast cancer cell lines.
- Analysis of endogenous double-stranded RNA (dsRNA) accumulation and origin.
Main Results:
- Repression of HNRNPC inhibited proliferation and tumor growth in breast cancer cells.
- HNRNPC repression led to the accumulation of endogenous dsRNA, activating the RIG-I-mediated interferon response.
- Accumulated dsRNA originated from pre-mRNA introns containing HNRNPC binding sites, distinct from retroviral sources.
Conclusions:
- HNRNPC is essential for breast cancer cells, primarily through its regulation of endogenous dsRNA and downstream interferon responses.
- This study reveals a novel function of HNRNPC in controlling dsRNA and innate immunity in cancer.
- Findings extend previous knowledge of HNRNPC's role in RNA splicing and intron binding.
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