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Updated: Feb 5, 2026

A Protocol for Rapid Post-mortem Cell Culture of Diffuse Intrinsic Pontine Glioma DIPG
Published on: March 7, 2017
Characterization of the immune microenvironment of diffuse intrinsic pontine glioma: implications for development of
Nicole A P Lieberman1, Kole DeGolier1, Heather M Kovar1
1Ben Towne Center for Childhood Cancer Research, Seattle Children's Research Institute, Seattle, Washington.
Insights
Diffuse intrinsic pontine glioma (DIPG) tumors do not show a highly immunosuppressive microenvironment. Natural killer (NK) cells effectively target DIPG cells, suggesting potential for immunotherapy development.
Area of Science:
- Pediatric neuro-oncology
- Cancer immunology
- Tumor microenvironment characterization
Background:
- Diffuse intrinsic pontine glioma (DIPG) is a fatal pediatric brainstem tumor with limited treatment options.
- Radiation therapy offers a median survival of 11 months, but surgical resection is impossible due to tumor location.
- The tumor microenvironment of DIPG and its potential for immunotherapy remain poorly understood.
Purpose of the Study:
- To characterize infiltrating immune cells in pediatric low- and high-grade gliomas and DIPG.
- To assess the expression of immunosuppressive factors within DIPG tumors.
- To evaluate the interaction between DIPG cells and key immune cells (macrophages, T cells, NK cells).
Main Methods:
- Tumor microarrays were analyzed for immune cell infiltration.
- Nanostring analysis was performed on tumor tissue RNA.
- Co-culture experiments with DIPG cells and immune cells were conducted, followed by flow cytometry and cytotoxicity assays.
Main Results:
- DIPG tumors showed no increased infiltration of macrophages or T cells compared to controls.
- DIPG tumors did not overexpress immunosuppressive factors like PD-L1 or TGF-β1.
- Natural killer (NK) cells demonstrated potent lysis of DIPG cells in vitro, while T cells were less effective.
Conclusions:
- DIPG tumors possess a neutral, rather than overtly immunosuppressive or inflammatory, microenvironment.
- Effective immunotherapy for DIPG will require strategies for immune cell recruitment, activation, and retention.
- NK cell-mediated cytotoxicity against DIPG warrants further investigation for therapeutic development.
Background:
Diffuse intrinsic pontine glioma (DIPG) is a uniformly fatal CNS tumor diagnosed in 300 American children per year. Radiation is the only effective treatment and extends overall survival to a median of 11 months. Due to its location in the brainstem, DIPG cannot be surgically resected. Immunotherapy has the ability to target tumor cells specifically; however, little is known about the tumor microenvironment in DIPGs. We sought to characterize infiltrating immune cells and immunosuppressive factor expression in pediatric low- and high-grade gliomas and DIPG.
Methods:
Tumor microarrays were stained for infiltrating immune cells. RNA was isolated from snap-frozen tumor tissue and Nanostring analysis performed. DIPG and glioblastoma cells were co-cultured with healthy donor macrophages, T cells, or natural killer (NK) cells, and flow cytometry and cytotoxicity assays performed to characterize the phenotype and function, respectively, of the immune cells.
Results:
DIPG tumors do not have increased macrophage or T-cell infiltration relative to nontumor control, nor do they overexpress immunosuppressive factors such as programmed death ligand 1 and/or transforming growth factor β1. H3.3-K27M DIPG cells do not repolarize macrophages, but are not effectively targeted by activated allogeneic T cells. NK cells lysed all DIPG cultures.
Conclusions:
DIPG tumors have neither a highly immunosuppressive nor inflammatory microenvironment. Therefore, major considerations for the development of immunotherapy will be the recruitment, activation, and retention of tumor-specific effector immune cells.
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