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Updated: Feb 5, 2026

Automated Segmentation of Cortical Grey Matter from T1-Weighted MRI Images
Published on: January 7, 2019
Examples of sub-millimeter, 7T, T1-weighted EPI datasets acquired with the T123DEPI sequence
Wietske van der Zwaag1, Pieter F Buur1, Alessio Fracasso1,2
1Spinoza Centre for Neuroimaging, Amsterdam, Netherlands.
Abstract:
These imaging data are examples of sub-millimeter resolution T1-weighted EPI (Echo Planar Imaging) acquired using the T123DEPI (T1-imaging with 2 3D-EPIs) sequence [1]; functional MRI data with matching resolution and distortion, and MP2RAGE (Magnetization Prepared 2 Rapid Acquisition Gradient Echoes) anatomical images [2], from the same subjects. Data from two protocols and subjects presented in the paper describing the sequence [1] are made available here: 1)0.8 mm protocol: whole brain, axial T123DEPI T1-weighted images; a 5-minute fMRI run with the same orientation and 27 mm coverage in the slice selection direction, covering the primary visual cortex. fMRI data were acquired while the volunteer viewed a flashing checkerboard stimulus; the unsmoothed GLM results of the fMRI and a 0.64 mm resolution MP2RAGE from the same subject. These data are from Experiment 3 in [1] 2)0.7 mm protocol: partial brain T123DEPI T1-weighted images with longer or shorter readouts; matching coronal echo planar images again acquired while viewing a flashing checkerboard stimulus and a 0.64 mm whole brain MP2RAGE from the same subject. These data are from Experiment 1 in [1].
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