Related Experiment Video
Updated: Feb 5, 2026

Tuning the Acidity of Pt/ CNTs Catalysts for Hydrodeoxygenation of Diphenyl Ether
Published on: August 17, 2019
The mechanism and conformational changes of polybrominated diphenyl ethers to TTR by fluorescence spectroscopy,
1Guangxi Colleges and Universities Key Laboratory of Food Safety and Detection; College of Chemistry and Bioengineering, Guilin University of Technology, Guilin 541004, China. yzs@glut.edu.cn.
Abstract:
Extracellular deposition of transthyretin (TTR) as amorphous aggregates and amyloid fibrils is genetically and biochemically linked to a number of human diseases characterized by nervous system or organ dysfunction. The interaction mechanism of TTR with different polybrominated diphenyl ethers (PBDEs), such as BDE49, BDE108 and BDE155, was studied by a variety of spectroscopic techniques and computer simulations. The results of steady-state fluorescence, time-resolved fluorescence and UV-Vis spectroscopy showed that BDE49, BDE108 and BDE155 could cause fluorescence quenching of TTR, which was mainly static quenching and Förster's resonance energy transfer. Molecular docking and thermodynamic analysis further confirmed that the binding of PBDEs to TTR was mainly hydrophobic and formed a cation-π with the residue LYS15 in the TTR. Quantum chemistry and energy contribution analysis of the ligand and residue LYS15 revealed that the binding was mainly due to the cation-π formed by the C atom of the benzene ring and the polar residue LYS15 (NH3+) of TTR. Moreover, the energy contributions of BDE49, BDE108 and BDE155 to the residue LYS15 (B Chain and D Chain) are relatively large which enables their combination to be more stable. Therefore, the residue LYS15 in TTR plays a crucial role in various physiological activities in the human body.
Insights
Polybrominated diphenyl ethers (PBDEs) bind to transthyretin (TTR), a protein linked to diseases. This interaction, primarily hydrophobic and involving cation-π bonding with LYS15, impacts TTR stability and function.
Area of Science:
- Biochemistry
- Molecular Biology
- Toxicology
Background:
- Transthyretin (TTR) aggregation is implicated in human diseases affecting the nervous system and organs.
- Polybrominated diphenyl ethers (PBDEs) are environmental contaminants with potential health impacts.
Purpose of the Study:
- To elucidate the interaction mechanism between TTR and specific PBDEs (BDE49, BDE108, BDE155).
- To understand the role of TTR residue LYS15 in PBDE binding and its implications for TTR function.
Main Methods:
- Spectroscopic techniques (steady-state fluorescence, time-resolved fluorescence, UV-Vis spectroscopy).
- Computational methods (molecular docking, thermodynamic analysis, quantum chemistry).
Main Results:
- PBDEs induce fluorescence quenching in TTR via static quenching and Förster's resonance energy transfer.
- Binding is primarily hydrophobic, involving cation-π interactions between PBDEs and TTR's LYS15 residue.
- Specific PBDEs exhibit significant energy contributions to LYS15, enhancing binding stability.
Conclusions:
- The LYS15 residue in TTR is critical for its interaction with PBDEs.
- PBDE binding to TTR, particularly via LYS15, may influence TTR's physiological roles and disease association.
- Understanding these interactions provides insights into PBDE toxicity and TTR-related pathologies.
Related Concept Videos
The Quantum-Mechanical Model of an Atom
Quantum Numbers
Conformity
IR Spectroscopy: Molecular Vibration Overview
Stretching vibrations are vibrational motions that occur along the bond line, changing the bond length or distance between two bonded atoms. They are further distinguished as symmetric or asymmetric. In symmetric stretching, the...
Molecular Spectroscopy: Absorption and Emission
Atomic Fluorescence Spectroscopy

