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Updated: Feb 5, 2026

Evaluating Cell Death Signaling by Immunofluorescence in a Rat Model of Ischemic Stroke
Published on: January 3, 2025
Spatiotemporal Protein Atlas of Cell Death-Related Molecules in the Rat MCAO Stroke Model
Jeong Seon Yoon1, Darong Jo2, Hye-Sun Lee1
1Department of Anatomy, Ajou University School of Medicine, Suwon 16499, Korea.
Abstract:
Ischemic stroke and cerebral infarction triggered by the blockage of blood supply can cause damage to the brain via a complex series of pathological changes. Recently, diverse therapies have emerged as promising candidates for the treatment of stroke. These treatments exert therapeutic effects by acting on diverse target molecules and cells in different time windows from the acute to chronic phases. Here, using immunohistochemistry, we show pathophysiological changes in the brain microenvironment at the hyperacute (within 6 h), acute (1~3 days), subacute (7 days), and chronic (1 month) phases following ischemic injury. Ischemic injury in rats was induced by occluding the middle cerebral artery and was validated by magnetic resonance imaging. The progression of damage to the brain was evaluated by immunohistochemistry for NeuN+ neurons, GFAP+ astrocytes, and Iba1+ microglia, and by the emergence of the cell death-related molecules such as AIF, FAF1, and activated caspase-3. Our data regarding the spatial and temporal information on pathophysiological changes may warrant the investigation of the timing of administration of therapeutic treatments in preclinical studies with an animal model of stroke.
Insights
This study details brain changes after ischemic stroke in rats, tracking neuron, astrocyte, and microglia responses over time. Understanding these temporal changes is crucial for optimizing stroke treatment timing in future research.
Area of Science:
- Neuroscience
- Pathology
- Pharmacology
Background:
- Ischemic stroke causes brain damage through complex pathological changes.
- Therapies for stroke target various molecules and cells across different time windows.
- Understanding the temporal progression of brain injury is key for effective treatment.
Purpose of the Study:
- To characterize pathophysiological changes in the brain microenvironment at hyperacute, acute, subacute, and chronic phases following ischemic injury.
- To provide spatial and temporal data on brain damage progression in a rat stroke model.
- To inform the timing of therapeutic interventions in preclinical stroke studies.
Main Methods:
- Ischemic stroke induced in rats via middle cerebral artery occlusion.
- Magnetic resonance imaging (MRI) validated ischemic injury.
- Immunohistochemistry used to assess NeuN+ neurons, GFAP+ astrocytes, and Iba1+ microglia.
- Detection of cell death markers: AIF, FAF1, and activated caspase-3.
Main Results:
- Detailed immunohistochemical analysis revealed distinct temporal patterns of neuronal, astrocytic, and microglial changes.
- The study identified the emergence of cell death-related molecules (AIF, FAF1, activated caspase-3) over time.
- Spatial and temporal mapping of brain microenvironment alterations was established.
Conclusions:
- The characterized temporal progression of pathophysiological changes provides critical insights into stroke injury.
- This data supports the investigation of optimal timing for therapeutic treatments in stroke preclinical studies.
- The findings highlight the importance of considering the time window for stroke interventions.
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