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Updated: Feb 5, 2026

Identification of Functional Protein Regions Through Chimeric Protein Construction
Published on: January 8, 2019
Differences in antigenic sites and other functional regions between genotype A and G mumps virus surface proteins
Sigrid Gouma1,2,3, Tessa Vermeire4,5,6, Steven Van Gucht7
1Centre for Infectious Disease Control, RIVM, Bilthoven, The Netherlands.
Abstract:
The surface proteins of the mumps virus, the fusion protein (F) and haemagglutinin-neuraminidase (HN), are key factors in mumps pathogenesis and are important targets for the immune response during mumps virus infection. We compared the predicted amino acid sequences of the F and HN genes from Dutch mumps virus samples from the pre-vaccine era (1957-1982) with mumps virus genotype G strains (from 2004 onwards). Genotype G is the most frequently detected mumps genotype in recent outbreaks in vaccinated communities, especially in Western Europe, the USA and Japan. Amino acid differences between the Jeryl Lynn vaccine strains (genotype A) and genotype G strains were predominantly located in known B-cell epitopes and in N-linked glycosylation sites on the HN protein. There were eight variable amino acid positions specific to genotype A or genotype G sequences in five known B-cell epitopes of the HN protein. These differences may account for the reported antigenic differences between Jeryl Lynn and genotype G strains. We also found amino acid differences in and near sites on the HN protein that have been reported to play a role in mumps virus pathogenesis. These differences may contribute to the occurrence of genotype G outbreaks in vaccinated communities.
Insights
Mumps virus surface proteins, fusion (F) and haemagglutinin-neuraminidase (HN), show genetic differences between pre-vaccine strains and current genotype G. These variations in B-cell epitopes and glycosylation sites on HN may explain antigenic differences and genotype G outbreaks in vaccinated populations.
Area of Science:
- Virology
- Immunology
- Molecular Biology
Background:
- Mumps virus surface proteins, fusion (F) and haemagglutinin-neuraminidase (HN), are critical for pathogenesis and immune targeting.
- Genotype G mumps virus is prevalent in recent outbreaks, particularly in vaccinated communities in Western Europe, the USA, and Japan.
- The Jeryl Lynn vaccine strain belongs to genotype A.
Purpose of the Study:
- To compare the amino acid sequences of F and HN genes from pre-vaccine era Dutch mumps virus strains with genotype G strains.
- To investigate potential antigenic differences and their contribution to genotype G outbreaks in vaccinated populations.
Main Methods:
- Comparative analysis of predicted amino acid sequences of mumps virus F and HN genes.
- Focus on Dutch mumps virus samples from the pre-vaccine era (1957-1982) and genotype G strains (post-2004).
- Identification of differences in B-cell epitopes and N-linked glycosylation sites on the HN protein.
Main Results:
- Significant amino acid differences were identified between genotype A (Jeryl Lynn vaccine) and genotype G strains.
- Eight variable amino acid positions were found in five known B-cell epitopes of the HN protein, specific to either genotype A or G.
- Differences were also observed in and near sites on the HN protein associated with mumps virus pathogenesis.
Conclusions:
- Amino acid variations in HN protein epitopes and glycosylation sites likely contribute to antigenic differences between Jeryl Lynn vaccine and genotype G strains.
- Observed genetic differences in HN may play a role in the emergence and persistence of genotype G mumps virus outbreaks in vaccinated communities.
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