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Updated: Feb 5, 2026

Quantifying Subcellular Ubiquitin-proteasome Activity in the Rodent Brain
Published on: May 21, 2019
Ubiquitin-Proteasome Axis, Especially Ubiquitin-Specific Protease-17 (
Nuri Yildirim1,2, Gizem Calibasi Kocal3,4, Zerrin Isik5
1Division of Gynecologic Oncology, Department of Obstetrics and Gynecology, Ege University and Department of Basic Oncology, Dokuz Eylul University. Ege Üniversitesi Hastanesi, Kadın Hastalıkları ve Doğum AD, 35100, Bornova, Izmir, Turkey. nuri-yildirim@hotmail.com.
Gene expression in ovarian cancer ascites differs significantly from primary tumors and peritoneal implants. The USP17 gene family plays a key role in these processes, suggesting it as a potential therapeutic target for epithelial-mesenchymal transition.
Area of Science:
- Oncology
- Molecular Biology
- Genomics
Background:
- High-grade serous ovarian cancer (HGSOC) is characterized by complex genetic alterations.
- Understanding gene expression differences between primary tumors, metastatic sites, and circulating tumor cells is crucial for HGSOC progression.
- Ascites and peritoneal implants represent distinct microenvironments influencing tumor cell behavior.
Purpose of the Study:
- To compare gene expression profiles and functional pathways in primary HGSOC tumors, metastatic peritoneal implants, and malignant cells within ascites.
- To identify key molecular differences and similarities across these distinct tumor compartments.
- To explore the role of specific gene families, such as USP17, in HGSOC progression and metastasis.
Main Methods:
- Comparative analysis of messenger RNA (mRNA) expression profiles from tissue biopsies (primary tumor, peritoneal implant) and ascites fluid from 10 HGSOC patients.
- Utilized gene ontology and pathway analysis to functionally characterize differentially expressed genes.
- Focused on identifying common and unique gene expression patterns across the three sample types.
Main Results:
- Significant gene expression differences were observed: 5 genes between primary tumor and peritoneal implant, 979 between primary tumor and ascites, and 649 between peritoneal implant and ascites.
- Commonly enriched gene ontology functions included protein deubiquitination, ubiquitin-dependent protein catabolism, and apoptotic processes.
- Genes associated with these functions predominantly belonged to the USP17 gene family.
Conclusions:
- Malignant cells in ascites exhibit substantial genetic divergence from primary tumors, suggesting dynamic adaptation within the ascites environment.
- The significant overlap in functions like protein deubiquitination and apoptosis between ascites and peritoneal implants indicates shared regulatory mechanisms.
- USP17 family genes are implicated in epithelial-mesenchymal transition (EMT), positioning USP17 as a potential therapeutic target for HGSOC metastasis.
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