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Updated: Sep 9, 2026

CAPRRESI: Chimera Assembly by Plasmid Recovery and Restriction Enzyme Site Insertion
Published on: June 25, 2017
Replicon fusions promoted by insertion sequences on Pseudomonas cepacia plasmid pTGL6
Abstract:
Plasmid pMR5 (pRP1ts) failed to replicate in Pseudomonas cepacia at 47 degrees C. Selection at this temperature for maintenance of tetracycline resistance associated with this plasmid allowed isolation of cointegrate plasmids formed by fusion of pMR5 with pTGL6, a 170 kb plasmid harbored by P. cepacia 249. In the cointegrate plasmids pTGL100, pTGL101, and pTGL102, different regions of pTGL6 were involved in fusion with the same tra-2-containing region of pMR5. Formation of all three plasmids was promoted by insertion sequences on pTGL6, which were also represented in the chromosome. Two different copies of a 1.3 kb element, IS401, were involved in formation of pTGL100 and pTGL101. Another insertion sequence, IS402 (1 kb), promoted the fusion which formed pTGL102. Southern hybridization experiments indicated that each of the cointegrate plasmids contained an additional copy of the fusion mediating element. Plasmid pTGL100 was observed to resolve into two independent replicons: pTGL6 and pTGL105 (pMR5::IS401), a novel derivative of pMR5 containing a copy of IS401. The third cointegrate plasmid, pTGL102, evolved in two steps: fusion of pTGL6 and pMR5 mediated by IS402, and transposition of IS411 (1.9 kb) to a region of pMR5 distinct from that involved in the fusion. Plasmid pTGL6 contained one copy of IS402 and IS411 while pTGL102 contained two copies of each of these elements.
Insights
Replication failure of plasmid pMR5 in Pseudomonas cepacia led to the formation of cointegrate plasmids. Insertion sequences on pTGL6 mediated these fusions, resulting in novel plasmid structures.
Area of Science:
- Microbiology
- Molecular Biology
- Genetics
Background:
- Plasmid pMR5 (pRP1ts) exhibited temperature-sensitive replication in Pseudomonas cepacia.
- P. cepacia 249 harbored a large 170 kb plasmid, pTGL6.
- Selection for tetracycline resistance at elevated temperatures induced plasmid instability.
Purpose of the Study:
- To investigate the formation and structure of cointegrate plasmids resulting from the fusion of pMR5 and pTGL6.
- To identify the role of insertion sequences in mediating plasmid cointegration.
Main Methods:
- Plasmid isolation and characterization from P. cepacia.
- Temperature-shift experiments to induce cointegrate formation.
- Southern hybridization to analyze plasmid structures and insertion sequence distribution.
Main Results:
- Cointegrate plasmids (pTGL100, pTGL101, pTGL102) were formed by the fusion of pMR5 and pTGL6.
- Insertion sequences IS401 and IS402 on pTGL6 promoted the formation of these cointegrates.
- Cointegrate plasmids contained additional copies of the fusion-mediating insertion sequences.
- Plasmid pTGL100 resolved into pTGL6 and a novel pMR5 derivative (pTGL105) containing IS401.
- Plasmid pTGL102 evolved through IS402-mediated fusion and IS411 transposition.
Conclusions:
- Insertion sequences play a crucial role in mediating the formation of cointegrate plasmids in P. cepacia.
- Plasmid cointegration and subsequent rearrangements can lead to the generation of novel plasmid structures and derivatives.
- The study elucidates mechanisms of plasmid evolution and genetic exchange within bacterial populations.
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