Evaluating collinearity effects on species distribution models: An approach based on virtual species simulation
Paulo De Marco1, Caroline Corrêa Nóbrega1,2
1Dept. Ecologia, Univ. Federal de Goiás, Goiânia, GO, Brazil.
Plos One
|September 12, 2018
Summary
Collinearity in environmental predictors increases uncertainty in species distribution models (SDMs). Using PCA-derived variables helps control these negative effects and aids variable selection for diverse species responses.
Area of Science:
- Ecology
- Computational Biology
- Environmental Science
Background:
- Species distribution modeling (SDM) is widely used but faces concerns about inaccuracies and misuse.
- Collinearity among environmental predictors is a known source of model uncertainty, yet lacks detailed recent evaluation.
Purpose of the Study:
- To evaluate the impact of collinearity on SDM accuracy and uncertainty.
- To compare models using PCA-derived variables versus original correlated predictors.
- To assess how modeling algorithms and species data characteristics influence sensitivity to collinearity.
Main Methods:
- Employed a virtual species approach for controlled experimentation.
- Compared SDMs built with PCA-derived variables against those using highly correlated original climate variables.
- Investigated the influence of different modeling algorithms and species data traits on collinearity effects.
Main Results:
- Collinearity among predictors demonstrably decreases SDM efficiency and heightens model uncertainty.
- More complex algorithms (e.g., Maxent) showed better performance and potentially utilized collinearity effectively.
- Species characteristics, particularly prevalence, influenced model sensitivity to collinearity, impacting efficiency.
Conclusions:
- PCA-derived variables are recommended to mitigate collinearity's negative impacts and improve objective variable selection.
- Even less accurate cell-level predictions can yield valuable insights into macroecological traits like range-size.
- Understanding collinearity's effects is crucial for reliable SDM application in ecological research.
Related Concept Videos
What is a Species?
50.4K
Overview
50.4K
Keystone Species
24.9K
Measures of species biodiversity, such as richness (i.e., the number of species present) and evenness (i.e., their relative abundance), describe an ecological community’s structure. Many factors affect community structure, including abiotic factors (e.g., sunlight and nutrients), disturbances (e.g., fire or flood), species interactions (e.g., predation or competition), and chance events (e.g., foreign species invasion). Certain species—such as keystone species—also play a...
24.9K
Formation of Species
45.3K
Speciation describes the formation of one or more new species from one or sometimes multiple original species. The resulting species are discrete from the parent species, and barriers to reproduction will typically exist. There are two primary mechanisms, speciation with and without geographic isolation—allopatric and sympatric speciation, respectively.
45.3K
Multi-species Conserved Sequences
4.9K
Next-generation sequencing technologies have created large genomic databases of a variety of animals and plants. Ever since the human genome project was completed, scientists studied the genome of primates, mammals, and other phylogenetically distant living beings. Such large-scale studies have provided new insights into the evolutionary relationship between organisms.
Although the genome of each species varies greatly from each other, a few sequences are highly conserved. Such conserved...
Although the genome of each species varies greatly from each other, a few sequences are highly conserved. Such conserved...
4.9K
Model Approaches for Pharmacokinetic Data: Distributed Parameter Models
249
Pharmacokinetic models are mathematical constructs that represent and predict the time course of drug concentrations in the body, providing meaningful pharmacokinetic parameters. These models are categorized into compartment, physiological, and distributed parameter models.
The distributed parameter models are specifically designed to account for variations and differences in some drug classes. This model is particularly useful for assessing regional concentrations of anticancer or...
The distributed parameter models are specifically designed to account for variations and differences in some drug classes. This model is particularly useful for assessing regional concentrations of anticancer or...
249
Virtual Work
1.4K
The principle of virtual work states that if a body is in static and dynamic equilibrium, then the sum of all the virtual work done by all external forces and couple moments for any given virtual displacement must be zero.
In static equilibrium, a body can experience an imaginary or virtual movement, such as displacement or rotation. The virtual work done by a force is equal to the dot product of force and virtual displacement in the direction of the force. When it comes to virtually rotating a...
In static equilibrium, a body can experience an imaginary or virtual movement, such as displacement or rotation. The virtual work done by a force is equal to the dot product of force and virtual displacement in the direction of the force. When it comes to virtually rotating a...
1.4K


