Ex vivo drug sensitivity testing as a means for drug repurposing in esophageal adenocarcinoma
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Updated: Feb 5, 2026

Drug Repurposing Hypothesis Generation Using the "RE:fine Drugs" System
Published on: December 11, 2016
Ines Lohse1,2,3, Hassan Al-Ali4,5,6,7, Claude-Henry Volmar1,2,3
1Center for Therapeutic Innovation, Miller School of Medicine, University of Miami, Miami, Florida, United States of America.
Background:
Esophageal cancer remains one of the hardest cancers to treat with rising incidence rates, low overall survival and high levels of treatment resistance. The lack of clinically available biomarkers hinder diagnosis and treatment stratification. While large scale sequencing approaches have uncovered a number of molecular makers, little has translated in the routine treatment of esophageal cancer patients.
Material And Methods:
We evaluate the treatment response towards a panel of 215 FDA-approved and 163 epigenetic compounds of 4 established and 2 patient-derived esophageal cancer cell lines. Cell viability was evaluated after 72h of treatment using cell titer glow. The drug sensitivity testing results for gemcitabine and cisplatin were validated using clonogenic assays.
Results:
The tested cell lines display different drug sensitivity profiles, although we found compounds that display efficacy in all of the tested established or patient-derived cell lines. Clonogenic assays confirmed the validity of the drug sensitivity testing results. Using the epigenetic library, we observed high sensitivity towards a number of epigenetic modifiers.
Discussion:
Ex vivo drug sensitivity testing may present a viable option for the treatment stratification of esophageal cancer patients and holds the potential to greatly improve patient outcome while reducing treatment toxicity.
Insights
Esophageal cancer drug sensitivity testing shows promise for personalized treatment. Ex vivo testing of epigenetic compounds may improve patient outcomes and reduce toxicity in esophageal cancer care.
Area of Science:
- Oncology
- Molecular Biology
- Pharmacology
Background:
- Esophageal cancer presents significant treatment challenges due to rising incidence, low survival rates, and treatment resistance.
- Lack of effective biomarkers impedes diagnosis and treatment stratification for esophageal cancer patients.
- Limited translation of molecular discoveries into routine clinical practice for esophageal cancer management.
Purpose of the Study:
- To evaluate the drug sensitivity of esophageal cancer cell lines against FDA-approved and epigenetic compounds.
- To identify potential therapeutic agents for esophageal cancer treatment stratification.
- To assess the utility of ex vivo drug sensitivity testing for improving patient outcomes.
Main Methods:
- Treatment response evaluation of 4 established and 2 patient-derived esophageal cancer cell lines.
- Screening of 215 FDA-approved and 163 epigenetic compounds.
- Cell viability assays (CellTiter-Glo) and validation with clonogenic assays for gemcitabine and cisplatin.
Main Results:
- Esophageal cancer cell lines exhibited varied drug sensitivity profiles.
- Specific compounds demonstrated efficacy across all tested cell lines.
- High sensitivity was observed for several epigenetic modifiers, validated by clonogenic assays.
Conclusions:
- Ex vivo drug sensitivity testing offers a viable strategy for esophageal cancer treatment stratification.
- This approach has the potential to significantly enhance patient outcomes.
- Personalized drug sensitivity testing may reduce treatment-related toxicity in esophageal cancer patients.
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